rfhg_50398.1

Basic information about the TSS

TSS ID:	rfhg_50398.1
Species:	human
Chr:	chr3

Start:	132722366
End:	132722442
Strand:	-

Source datasets

PRJNA615891|PRJNA548673|PRJNA4843412|DRA013844|PRJNA401781

Protocol

TIF-seq2|CAGE|ReCappable-seq|SLIC_CAGE|NETCAGE

TSS cluster detected^*

7

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	PLS,CTCF-bound (EH38D3486250,EH38E2239057)
Category:	PLS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	ENST00000337331.10:0 ENST00000684294.1:0 ENST00000465756.5:0 ENST00000683570.1:0 ENST00000383282.3:0 AL832877:0 BC131729:0 AY257864:0 AK055893:0 BC068082:0
GeneID:	27031
HGNC/MGI_ID:	HGNC:7907
UniProt_ID:	F2Z3A8 Q7Z494
Nearer transcript ids and distances:	BC172279:9 KJ902445:10 ENST00000471702.2:-17 NR_037804.1:-17 AB082531:-17 ENST00000684756.1:288 ENST00000469232.5:359 AY257866:359 view more...

Gene_name:	nephrocystin 3
Gene_symbol:	NPHP3
Gene_synonyms:	CFAP31 FLJ30691 FLJ36696 KIAA2000 MKS7 NPH3 SLSN3
Gene_source:	HGNC:7907

TATA-Box annotation

Distance to TSS:	5
Nearest PromoterID:	NM_153240
Entrez ID:	27031
Nearest Unigene:	Hs.511991
Nearest Refseq:	NM_153240
Nearest Ensembl:	ENSG00000113971
Gene Name:	nephrocystin 3
Gene Alias:	CFAP31\|MKS7\|NPH3\|RHPD\|RHPD1\|SLSN3
Gene Type:	protein-coding
CpG%:	0.078947
GC%:	0.649351
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

TSS expression

Expression data not found.