rfhg_55514.1
Basic information about the TSS
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| Source datasets | PRJNA4843412|DRA013844|PRJNA615891 | |||||||||||||
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| Protocol | NETCAGE|CAGE|SLIC_CAGE | |||||||||||||
| TSS cluster detected* | 3 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | PLS,CTCF-bound (EH38D3541828,EH38E2276143) |
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| Category: | PLS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 2 |
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| Nearest PromoterID: | NM_002111 |
| Entrez ID: | 3064 |
| Nearest Unigene: | Hs.518450 |
| Nearest Refseq: | NM_002111 |
| Nearest Ensembl: | ENSG00000197386 |
| Gene Name: | huntingtin; solute carrier family 6 member 4 |
| Gene Alias: | HD|IT15|LOMARS |
| Gene Type: | protein-coding |
| CpG%: | 0.119048 |
| GC%: | 0.744186 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
TSS expression
Property "Nearest transcripts" (as page type) with input value "BC172756:120 KJ535072:122 LQ651786:123 MA398268:123 LQ651683:128 MA398165:128 LQ651787:141 MA398269:141 LQ581635:143 LY526892:143 MB015774:143 MP319200:143 LQ651684:146 MA398166:146 LQ581634:147 LY526891:147 MB015773:147 MP319199:147 LQ581633:148 LY526890:148 MB015772:148 MP319198:148 LQ581587:151 MB015726:151 MP319152:151 LQ581588:-152 LY526845:-152 L12392:-152 MB015727:-152 MP319153:-152 MP248044:184" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.