rfhg_56600.1

From referenceTSS
Jump to: navigation, search

Basic information about the TSS


TSS ID:rfhg_56600.1
Species:human
Chr:chr4
Start:24584598
End:24584608
Strand:-
Source datasetsFANTOM5
ProtocolCAGE
TSS cluster detected*1

  * The number of TSS cluster called data-sets (maximum 17)


cCREs annotation


Description:PLS,CTCF-bound (EH38D3559110,EH38E2286675)
Category:PLS

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.



Gene and protein annotation


Nearest transcript id and distance:LF206842:15
MA442419:15
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:
  • ENST00000336812.5:44
  • NM_001358.3:44
  • AB001636:44
  • BC035974:58
  • ENST00000513092.1:61
  • AK303506:64
  • AF279891:205
  • LF358491:219
  • MA594068:219
  • ENST00000511553.5:316
view more...
Gene_name:
Gene_symbol:
Gene_synonyms:
Gene_source:



TATA-Box annotation


Distance to TSS:-49
Nearest PromoterID:NM_001358
Entrez ID:1665
Nearest Unigene:Hs.696074
Nearest Refseq:NM_001358
Nearest Ensembl:ENSG00000109606
Gene Name:
Gene Alias:DBP1|DDX15|HRH2|PRP43|PRPF43|PrPp43p
Gene Type:protein-coding
CpG%:0.200000
GC%:0.727273
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):