rfhg_62534.1

From referenceTSS
Jump to: navigation, search

Basic information about the TSS


TSS ID:rfhg_62534.1
TSS ID(Version3):hg_54162.1
Species:human
Chr:chr4
Start:141332608
End:141332628
Strand:-
Source datasetsFANTOM5|ENCODE|PRJNA401781|PRJNA548673|PRJNA597322
ProtocolCAGE|oligo_capping|ReCappable-seq|RAMPAGE|STRIPE-seq
TSS cluster detected*7

  * The number of TSS cluster called data-sets (maximum 17)


cCREs annotation


Description:PLS (EH38D3634194,EH38E2331238)
Category:PLS

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.



Gene and protein annotation


Nearest transcript id and distance:ENST00000653420.1:0
ENST00000670611.1:0
ENST00000658372.1:0
ENST00000511213.2:0
GeneID:100507639
HGNC/MGI_ID:HGNC:53363
UniProt_ID:
Nearer transcript ids and distances:
  • ENST00000652978.1:-75
Gene_name:long intergenic non-protein coding RNA 2432
Gene_symbol:LINC02432
Gene_synonyms:
Gene_source:HGNC:53363



TATA-Box annotation


Distance to TSS:-1
Nearest PromoterID:NR_121625
Entrez ID:100507639
Nearest Unigene:Hs.535010
Nearest Refseq:NR_121625
Nearest Ensembl:
Gene Name:long intergenic non-protein coding RNA 2432
Gene Alias:-
Gene Type:ncRNA
CpG%:0.050000
GC%:0.666667
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):



TSS expression

Expression data not found.