rfhg_62784.1

Basic information about the TSS

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TSS ID: rfhg_62784.1 TSS ID(Version3): hg_49924.1 Species: human Chr: chr4		Start: 146175685 End: 146175760 Strand: +
Source datasets	FANTOM5|EPD|DBTSS|DRA000914|PRJNA548673|PRJNA401781 |PRJNA615891|PRJNA597322|PRJNA4843412|DRA013844|PRJDB5282
Protocol	CAGE|TSS_database|TSS-seq|oligo_capping|RAMPAGE |ReCappable-seq|SLIC_CAGE|STRIPE-seq|TIF-seq2|NETCAGE|C1CAGE
TSS cluster detected*	15

  * The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

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Description:	PLS,CTCF-bound (EH38D3637715,EH38E2333336)
Category:	PLS

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

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Nearest transcript id and distance: ENST00000515311.5:0 ENST00000296581.11:0 ENST00000503982.1:0 ENST00000649747.1:0 ENST00000502781.5:0 ENST00000504181.1:0 BC016026:0 BC019894:0 AJ238098:0 AF182292:0 AK312126:0 GeneID: 11157 HGNC/MGI_ID: HGNC:17017 UniProt_ID: P62312 Nearer transcript ids and distances: ENST00000510331.1:10

Gene_name: LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated Gene_symbol: LSM6 Gene_synonyms: YDR378C Gene_source: HGNC:17017

TATA-Box annotation

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Distance to TSS:	4
Nearest PromoterID:	NM_007080
Entrez ID:	11157
Nearest Unigene:	Hs.190520
Nearest Refseq:	NM_007080
Nearest Ensembl:	ENSG00000164167
Gene Name:	LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated
Gene Alias:	YDR378C
Gene Type:	protein-coding
CpG%:	0.066667
GC%:	0.605263
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

TSS expression

Expression data not found.