rfhg_74066.1

Basic information about the TSS

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TSS ID: rfhg_74066.1 Species: human Chr: chr5		Start: 150357659 End: 150357746 Strand: +
Source datasets	PRJNA615891|PRJNA401781|PRJNA548673|PRJNA597322 |PRJNA4843412|DRA013844|PRJDB5282
Protocol	TIF-seq2|RAMPAGE|CAGE|ReCappable-seq|SLIC_CAGE |oligo_capping|STRIPE-seq|NETCAGE|C1CAGE
TSS cluster detected*	11

  * The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

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Description:	PLS,CTCF-bound (EH38D3776371,EH38E2420890)
Category:	PLS

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

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Nearest transcript id and distance: ENST00000445265.6:0 ENST00000323668.11:0 ENST00000643257.2:0 ENST00000646961.1:0 ENST00000513538.2:0 ENST00000439160.6:0 ENST00000394269.7:0 ENST00000427724.7:0 U76366:0 AK296918:0 AK307586:0 AK303611:0 AK225284:0 BC011764:0 BC014559:0 BC033093:0 BC016144:0 GeneID: 6949 HGNC/MGI_ID: HGNC:11654 UniProt_ID: A0A2R8Y857 B4DLB1 H0Y8Y7 Q13428 Nearer transcript ids and distances: ENST00000504761.6:1 ENST00000513346.5:1 KJ897647:1 AY460334:1 U40847:-5 ENST00000643812.1:13 ENST00000377797.7:-20 ENST00000650162.1:-30 LF211061:-32 MA446638:-32 ENST00000515516.1:37 BC027252:45 LF343658:63 MA579235:63 view more...

Gene_name: treacle ribosome biogenesis factor 1 Gene_symbol: TCOF1 Gene_synonyms: TCS treacle Gene_source: HGNC:11654

TATA-Box annotation

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Distance to TSS:	5
Nearest PromoterID:	NM_000356
Entrez ID:	6949
Nearest Unigene:	Hs.519672
Nearest Refseq:	NM_000356
Nearest Ensembl:	ENSG00000070814
Gene Name:	treacle ribosome biogenesis factor 1
Gene Alias:	MFD1|TCS|TCS1|treacle
Gene Type:	protein-coding
CpG%:	0.160920
GC%:	0.784091
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

TSS expression

Expression data not found.