rfhg_80246.1

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Basic information about the TSS


TSS ID:rfhg_80246.1
TSS ID(Version3):hg_66765.1
Species:human
Chr:chr6
Start:30720320
End:30720414
Strand:+
Source datasetsFANTOM5|EPD|DRA000914|RAMPAGE|PRJNA548673|PRJNA615891
|PRJNA401781|PRJDB5282|PRJNA597322|DRA013844|PRJNA4843412
ProtocolCAGE|TSS_database|RAMPAGE|ReCappable-seq|SLIC_CAGE|C1CAGE
|TIF-seq2|STRIPE-seq|oligo_capping|NETCAGE
TSS cluster detected*15

  * The number of TSS cluster called data-sets (maximum 17)


cCREs annotation


Description:PLS,CTCF-bound (EH38D3830436,EH38E2458509)
Category:PLS

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.



Gene and protein annotation


Nearest transcript id and distance:ENST00000327892.13:0
AK303227:0
BC020946:0
AK302195:0
AK297638:0
AK316265:0
AK098772:0
BC103746:0
AF141349:0
AF070600:0
BC070326:0
BC002347:0
BC007605:0
AB062393:0
BC001938:0
BC005838:0
AF070561:0
AF070593:0
BC013374:0
BC021909:0
BC019924:0
BC062532:0
GeneID:203068
HGNC/MGI_ID:HGNC:12412 HGNC:20778
UniProt_ID:B4DMU8 B4DXZ5 B4E052 B7ZAF0 Q5SU16 Q6P602
Nearer transcript ids and distances:
  • AK297489:34
  • DQ891742:90
  • DQ891828:90
  • DQ894920:90
  • AB463327:91
  • CU676482:92
  • KJ895812:92
  • GQ900970:96
  • V00599:114
  • KJ904004:-317
view more...
Gene_name:tubulin beta 2A class IIa; tubulin beta class I
Gene_symbol:TUBB TUBB2A
Gene_synonyms:M40 MGC16435 OK/SW-cl.56 Tubb5 dJ40E16.7
Gene_source:HGNC:12412 HGNC:20778



TATA-Box annotation


Distance to TSS:15
Nearest PromoterID:NM_178014
Entrez ID:203068
Nearest Unigene:Hs.636480
Nearest Refseq:NM_178014
Nearest Ensembl:ENSG00000196230
Gene Name:tubulin beta 2A class IIa; tubulin beta class I
Gene Alias:CDCBM6|CSCSC1|M40|OK/SW-cl.56|TUBB1|TUBB5
Gene Type:protein-coding
CpG%:0.074468
GC%:0.642105
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):



TSS expression

Expression data not found.