rfhg_85880.1
Basic information about the TSS
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| Source datasets | PRJNA4843412 | |||||||||||||
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| Protocol | NETCAGE | |||||||||||||
| TSS cluster detected* | 1 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | PLS,CTCF-bound (EH38D3883458,EH38E2492011) |
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| Category: | PLS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | -182 |
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| Nearest PromoterID: | NM_001300929 |
| Entrez ID: | 8724 |
| Nearest Unigene: | Hs.12102 |
| Nearest Refseq: | NM_003795 |
| Nearest Ensembl: | ENSG00000112335 |
| Gene Name: | sorting nexin 3 |
| Gene Alias: | Grd19|MCOPS8|SDP3 |
| Gene Type: | protein-coding |
| CpG%: | 0.074074 |
| GC%: | 0.618182 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
TSS expression
Property "Nearest transcripts" (as page type) with input value "AK289476:146 ENST00000230085.13:155 NM_003795.6:155 NM_001300928.2:155 NM_152827.4:155 NM_001300929.2:155 BC014580:157 BC015179:171 BC008444:177 ENST00000426155.6:231 AB047360:237 AF034546:237 AF062483:254 EU831975:274 EU832068:274 KJ892607:274 BT007114:274 CR456898:274 CU677753:274 KJ904608:274" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.