rfhg_87369.1
Basic information about the TSS
|
| |||||||||||||
| Source datasets | FANTOM5 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Protocol | CAGE | |||||||||||||
| TSS cluster detected* | 1 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | PLS,CTCF-bound (EH38D3901877,EH38E2504107) |
|---|---|
| Category: | PLS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
|
|
TATA-Box annotation
| Distance to TSS: | 30 |
|---|---|
| Nearest PromoterID: | NM_001368151 |
| Entrez ID: | 55350 |
| Nearest Unigene: | Hs.183656 |
| Nearest Refseq: | NM_018399 |
| Nearest Ensembl: | |
| Gene Name: | vanin 3, pseudogene |
| Gene Alias: | HSA238982 |
| Gene Type: | protein-coding |
| CpG%: | 0.125000 |
| GC%: | 0.333333 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
TSS expression
Property "Nearest transcripts" (as page type) with input value "BC104416:-13 BC104417:-13 BC113022:-13 BC113023:-13 BC148317:-13 ENST00000414302.7:-17 AK075110:-25 ENST00000367927.9:-26 ENST00000425515.6:-26 ENST00000392393.7:-26 ENST00000674148.1:-26 ENST00000450865.2:-26 ENST00000448644.2:-26 NR_173394.1:-26 NR_173391.1:-26 NR_173395.1:-26 NR_173396.1:-26 NR_173393.1:-26 NR_173392.1:-26 AK314708:-26 ENST00000509351.5:39 ENST00000417437.6:39 ENST00000423615.6:39 ENST00000427187.6:39 ENST00000275223.7:39 ENST00000519686.6:39 AB435052:39 AB435053:39 AB435054:39 AB435055:39 AB435056:39 AB435057:39 AB435058:39 AB435059:39 AB435060:39 AB435061:39 ENST00000544102.1:398" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.