rfhg_87370.1

From referenceTSS
Jump to: navigation, search

Basic information about the TSS


TSS ID:rfhg_87370.1
Species:human
Chr:chr6
Start:132734758
End:132734771
Strand:-
Source datasetsFANTOM5|EPD
ProtocolCAGE|TSS_database
TSS cluster detected*2

  * The number of TSS cluster called data-sets (maximum 17)


cCREs annotation


Description:PLS,CTCF-bound (EH38D3901877,EH38E2504107)
Category:PLS

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.



Gene and protein annotation


Nearest transcript id and distance:ENST00000367927.9:0
ENST00000425515.6:0
ENST00000392393.7:0
ENST00000674148.1:0
ENST00000450865.2:0
ENST00000448644.2:0
AK075110:0
AK314708:0
GeneID:55350
HGNC/MGI_ID:HGNC:16431
UniProt_ID:F5GYI1 Q9NY84
Nearer transcript ids and distances:
  • ENST00000414302.7:2
  • BC104416:6
  • BC104417:6
  • BC113022:6
  • BC113023:6
  • BC148317:6
  • AJ238982:21
  • ENST00000509351.5:66
  • ENST00000417437.6:66
  • ENST00000423615.6:66
  • ENST00000427187.6:66
  • ENST00000275223.7:66
  • ENST00000519686.6:66
  • AB435052:66
  • AB435053:66
  • AB435054:66
  • AB435055:66
  • AB435056:66
  • AB435057:66
  • AB435058:66
  • AB435059:66
  • AB435060:66
  • AB435061:66
  • ENST00000544102.1:425
view more...
Gene_name:vanin 3, pseudogene
Gene_symbol:VNN3P
Gene_synonyms:HSA238982
Gene_source:HGNC:16431



TATA-Box annotation


Distance to TSS:1
Nearest PromoterID:NM_001368151
Entrez ID:55350
Nearest Unigene:Hs.183656
Nearest Refseq:NM_018399
Nearest Ensembl:
Gene Name:vanin 3, pseudogene
Gene Alias:HSA238982
Gene Type:protein-coding
CpG%:0.000000
GC%:0.214286
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):



TSS expression

Expression data not found.


















Property "Nearest transcripts" (as page type) with input value "ENST00000414302.7:2 BC104416:6 BC104417:6 BC113022:6 BC113023:6 BC148317:6 AJ238982:21 ENST00000509351.5:66 ENST00000417437.6:66 ENST00000423615.6:66 ENST00000427187.6:66 ENST00000275223.7:66 ENST00000519686.6:66 AB435052:66 AB435053:66 AB435054:66 AB435055:66 AB435056:66 AB435057:66 AB435058:66 AB435059:66 AB435060:66 AB435061:66 ENST00000544102.1:425" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.