rfmm_100642.1

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Basic information about the TSS


TSS ID:rfmm_100642.1
Species:mouse
Chr:chr10
Start:123032373
End:123032373
Strand:-
Source datasetsFANTOM5
ProtocolCAGE
TSS cluster detected*1

  * The number of TSS cluster called data-sets (maximum 5)


cCREs annotation


Description:PLS (EM10D2345755,EM10E0966164)
Category:PLS

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.



Gene and protein annotation


Nearest transcript id and distance:LF225000:-356
MA460577:-356
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:
  • L10903:-399
  • AK145749:-455
  • AF468037:-455
  • ENSMUST00000219010.2:-458
  • ENSMUST00000219619.2:-458
  • AK046332:-458
  • ENSMUST00000217985.2:-459
  • AK133852:-459
  • AK083303:-459
  • AK122301:-466
  • BC050042:-467
  • ENSMUST00000220284.2:-473
  • AK164382:-473
  • AK163315:-479
  • ENSMUST00000020334.9:-485
  • AK168755:-485
  • AK161469:-493
  • ENSMUST00000219992.2:-498
  • AK161957:-498
view more...
Gene_name:
Gene_symbol:
Gene_synonyms:
Gene_source:



TATA-Box annotation


Distance to TSS:515
Nearest PromoterID:XM_036155616.1
Entrez ID:Usp15
Nearest Unigene:XM_006513228
Nearest Refseq:
Nearest Ensembl:
Gene Name:
Gene Alias:
Gene Type:
CpG%:0.000000
GC%:0.000000
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):




















Property "Nearest transcripts" (as page type) with input value "L10903:-399 AK145749:-455 AF468037:-455 ENSMUST00000219010.2:-458 ENSMUST00000219619.2:-458 AK046332:-458 ENSMUST00000217985.2:-459 AK133852:-459 AK083303:-459 AK122301:-466 BC050042:-467 ENSMUST00000220284.2:-473 AK164382:-473 AK163315:-479 ENSMUST00000020334.9:-485 AK168755:-485 AK161469:-493 ENSMUST00000219992.2:-498 AK161957:-498" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.