rfmm_108459.1

Basic information about the TSS

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TSS ID: rfmm_108459.1 Species: mouse Chr: chr11		Start: 80268802 End: 80268851 Strand: -
Source datasets	PRJDB10397|GSE117655|DRA000914
Protocol	C1CAGE|deepCAGE|CAGE_and_CAGEscan
TSS cluster detected*	3

  * The number of TSS cluster called data-sets (maximum 5)

cCREs annotation

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Description:	PLS,CTCF-bound (EM10D1244898,EM10E0512266)
Category:	PLS

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

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Nearest transcript id and distance: ENSMUST00000179332.8:0 AK135352:0 AK078548:0 BC055024:0 BC044897:0 AK017667:0 AK153246:0 GeneID: 70591 HGNC/MGI_ID: MGI:1917841 UniProt_ID: A0PJK9 J3KMQ6 Nearer transcript ids and distances: ENSMUST00000103225.11:-9 ENSMUST00000134274.2:-9 LF198716:-10 MA434293:-10 view more...

Gene_name: RIKEN cDNA 5730455P16 gene Gene_symbol: 5730455P16Rik Gene_synonyms: Gene_source: MGI:1917841

TATA-Box annotation

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Distance to TSS:	15
Nearest PromoterID:	NM_027472.3
Entrez ID:	5730455P16Rik
Nearest Unigene:	XM_006534198
Nearest Refseq:
Nearest Ensembl:
Gene Name:	RIKEN cDNA 5730455P16 gene
Gene Alias:
Gene Type:
CpG%:	0.081633
GC%:	0.660000
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

TSS expression

Expression data not found.