rfmm_114505.1

From referenceTSS
Jump to: navigation, search

Basic information about the TSS


TSS ID:rfmm_114505.1
TSS ID(Version3):mm_106609.1
Species:mouse
Chr:chr11
Start:120687185
End:120687241
Strand:-
Source datasetsFANTOM5|EPD|DRA000914|GSE117655|PRJDB10397
ProtocolCAGE|TSS_database|CAGE_and_CAGEscan|deepCAGE|C1CAGE
TSS cluster detected*5

  * The number of TSS cluster called data-sets (maximum 5)


cCREs annotation


Description:PLS,CTCF-bound (EM10D2392442,EM10E0988779)
Category:PLS

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.



Gene and protein annotation


Nearest transcript id and distance:ENSMUST00000106135.8:0
ENSMUST00000026151.11:0
ENSMUST00000167023.8:0
ENSMUST00000146008.2:0
ENSMUST00000106133.8:0
ENSMUST00000143139.8:0
ENSMUST00000129955.2:0
AK148307:0
AK088243:0
AK037538:0
AK147967:0
GeneID:68730
HGNC/MGI_ID:MGI:1915980
UniProt_ID:B1ATU5 B1ATU6 B1ATU7 Q8C2P3
Nearer transcript ids and distances:
  • AK179723:307
Gene_name:dihydrouridine synthase 1-like (S. cerevisiae)
Gene_symbol:Dus1l
Gene_synonyms:1110032N12Rik
Gene_source:MGI:1915980



TATA-Box annotation


Distance to TSS:8
Nearest PromoterID:NM_026824.4
Entrez ID:Dus1l
Nearest Unigene:XM_011249214
Nearest Refseq:
Nearest Ensembl:
Gene Name:dihydrouridine synthase 1-like (S. cerevisiae)
Gene Alias:
Gene Type:
CpG%:0.160714
GC%:0.701754
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):



TSS expression

Expression data not found.