rfmm_116522.1

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Basic information about the TSS


TSS ID:rfmm_116522.1
Species:mouse
Chr:chr12
Start:51876128
End:51876176
Strand:+
Source datasetsFANTOM5
ProtocolCAGE
TSS cluster detected*1

  * The number of TSS cluster called data-sets (maximum 5)


cCREs annotation


Description:pELS,CTCF-bound (EM10D2403338,EM10E0992622)
Category:pELS

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.



Gene and protein annotation


Nearest transcript id and distance:AK033420:272
GeneID:544864
HGNC/MGI_ID:MGI:3643232
UniProt_ID:Q8CCC9
Nearer transcript ids and distances:
    Gene_name:predicted gene 5785
    Gene_symbol:Gm5785
    Gene_synonyms:
    Gene_source:MGI:3643232



    TATA-Box annotation


    Distance to TSS:167
    Nearest PromoterID:NM_144788.2
    Entrez ID:Hectd1
    Nearest Unigene:XM_036157286
    Nearest Refseq:
    Nearest Ensembl:
    Gene Name:predicted gene 5785
    Gene Alias:
    Gene Type:
    CpG%:0.104167
    GC%:0.693878
    TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):



    TSS expression

    Expression data not found.