rfmm_1209.1

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Basic information about the TSS


TSS ID:rfmm_1209.1
Species:mouse
Chr:chr1
Start:38875615
End:38875709
Strand:-
Source datasetsFANTOM5
ProtocolCAGE
TSS cluster detected*1

  * The number of TSS cluster called data-sets (maximum 5)


cCREs annotation


Description:PLS,CTCF-bound (EM10D1049728,EM10E0435242)
Category:PLS

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.



Gene and protein annotation


Nearest transcript id and distance:NM_001029878.2:-59
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:
  • ENSMUST00000147695.9:-83
  • ENSMUST00000191724.2:160
  • AK012882:160
view more...
Gene_name:
Gene_symbol:
Gene_synonyms:
Gene_source:



TATA-Box annotation


Distance to TSS:106
Nearest PromoterID:NM_001029878.2
Entrez ID:Lonrf2
Nearest Unigene:NM_001029878
Nearest Refseq:
Nearest Ensembl:
Gene Name:
Gene Alias:
Gene Type:
CpG%:0.170213
GC%:0.800000
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):