rfmm_121419.1

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Basic information about the TSS


TSS ID:rfmm_121419.1
TSS ID(Version3):mm_112610.1
Species:mouse
Chr:chr13
Start:14804823
End:14804893
Strand:+
Source datasetsFANTOM5|EPD|DRA000914|PRJDB10397|GSE117655
ProtocolCAGE|TSS_database|CAGE_and_CAGEscan|C1CAGE|deepCAGE
TSS cluster detected*5

  * The number of TSS cluster called data-sets (maximum 5)


cCREs annotation


Description:PLS,CTCF-bound (EM10D2426939,EM10E1002199)
Category:PLS

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.



Gene and protein annotation


Nearest transcript id and distance:ENSMUST00000038690.6:0
ENSMUST00000222052.2:0
AK169400:0
AK167401:0
AK077649:0
AK050507:0
AK030506:0
GeneID:105351
HGNC/MGI_ID:MGI:2145422
UniProt_ID:A0A1Y7VLG8 Q91WD4
Nearer transcript ids and distances:
  • ENSMUST00000178289.3:-84
Gene_name:expressed sequence AW209491
Gene_symbol:AW209491
Gene_synonyms:
Gene_source:MGI:2145422



TATA-Box annotation


Distance to TSS:15
Nearest PromoterID:NM_134067.4
Entrez ID:AW209491
Nearest Unigene:NM_001104646
Nearest Refseq:
Nearest Ensembl:
Gene Name:expressed sequence AW209491
Gene Alias:
Gene Type:
CpG%:0.042857
GC%:0.633803
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):



TSS expression

Expression data not found.