rfmm_121978.1

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Basic information about the TSS


TSS ID:rfmm_121978.1
Species:mouse
Chr:chr13
Start:21900556
End:21900571
Strand:+
Source datasetsPRJDB10397|GSE117655|DRA000914
ProtocolC1CAGE|deepCAGE|CAGE_and_CAGEscan
TSS cluster detected*3

  * The number of TSS cluster called data-sets (maximum 5)


cCREs annotation


Description:PLS (EM10D1339967,EM10E0553267)
Category:PLS

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.



Gene and protein annotation


Nearest transcript id and distance:BC099406:11
GeneID:319191
HGNC/MGI_ID:MGI:2448457
UniProt_ID:
Nearer transcript ids and distances:
  • ENSMUST00000070124.5:21
Gene_name:H2A clustered histone 13
Gene_symbol:H2ac13
Gene_synonyms:H2a-291A Hist1h2ai
Gene_source:MGI:2448457



TATA-Box annotation


Distance to TSS:-19
Nearest PromoterID:NM_178182.2
Entrez ID:H2ac13
Nearest Unigene:NM_178182
Nearest Refseq:
Nearest Ensembl:
Gene Name:H2A clustered histone 13
Gene Alias:
Gene Type:
CpG%:0.066667
GC%:0.500000
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):



TSS expression

Expression data not found.