rfmm_127356.1
Basic information about the TSS
|
| |||||||||||||
| Source datasets | FANTOM5 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Protocol | CAGE | |||||||||||||
| TSS cluster detected* | 1 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 5)
cCREs annotation
| Description: | PLS,CTCF-bound (EM10D2457253,EM10E1014091) |
|---|---|
| Category: | PLS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
|
|
TATA-Box annotation
| Distance to TSS: | 267 |
|---|---|
| Nearest PromoterID: | NM_001033228.3 |
| Entrez ID: | Itga1 |
| Nearest Unigene: | NM_001033228 |
| Nearest Refseq: | |
| Nearest Ensembl: | |
| Gene Name: | integrin alpha 1; predicted gene, 49395 |
| Gene Alias: | |
| Gene Type: | |
| CpG%: | 0.028571 |
| GC%: | 0.500000 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
TSS expression
Property "Nearest transcripts" (as page type) with input value "ENSMUST00000225093.2:-5 ENSMUST00000224865.2:-14 AK137169:-14 ENSMUST00000224495.2:56 AK171212:-105 BC014765:-111 BC167237:149 ENSMUST00000224493.2:-162 AK169964:-162 ENSMUST00000224119.2:-163 AK029105:-163 AK043769:-187 ENSMUST00000224997.2:-206 AK077286:-206 ENSMUST00000224268.2:-216 AK141204:-216 ENSMUST00000061673.9:-249 NM_001033228.3:-249 AK035870:-249" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.