rfmm_151897.1

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Basic information about the TSS


TSS ID:rfmm_151897.1
TSS ID(Version3):mm_138821.1
Species:mouse
Chr:chr17
Start:40158570
End:40158586
Strand:+
Source datasetsFANTOM5|DRA000914|PRJDB10397|GSE117655
ProtocolCAGE|CAGE_and_CAGEscan|C1CAGE|deepCAGE
TSS cluster detected*4

  * The number of TSS cluster called data-sets (maximum 5)


cCREs annotation


Description:-
Category:-

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.



Gene and protein annotation


Nearest transcript id and distance:AY194859:-8
GeneID:387239
HGNC/MGI_ID:MGI:2676865
UniProt_ID:
Nearer transcript ids and distances:
  • AB350881:42
  • AB352917:42
  • AB352347:-100
  • DQ540853:364
  • BC042411:-388
  • K01380:440
  • M55272:456
  • DQ541113:-464
  • DQ553409:-476
  • DQ541851:480
  • AB349980:-484
  • AB351077:491
view more...
Gene_name:microRNA 199b
Gene_symbol:Mir199b
Gene_synonyms:Mirn199b mmu-mir-199b
Gene_source:MGI:2676865



TATA-Box annotation


Distance to TSS:1333
Nearest PromoterID:Rn18s-rs5
Entrez ID:Rn18s-rs5
Nearest Unigene:Rn18s-rs5
Nearest Refseq:
Nearest Ensembl:
Gene Name:microRNA 199b
Gene Alias:
Gene Type:NA
CpG%:0.000000
GC%:0.705882
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):



TSS expression

Expression data not found.