rfmm_18208.1

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Basic information about the TSS


TSS ID:rfmm_18208.1
Species:mouse
Chr:chr2
Start:112096802
End:112096849
Strand:+
Source datasetsFANTOM5|EPD
ProtocolCAGE|TSS_database
TSS cluster detected*2

  * The number of TSS cluster called data-sets (maximum 5)


cCREs annotation


Description:PLS,CTCF-bound (EM10D2653957,EM10E1094649)
Category:PLS

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.



Gene and protein annotation


Nearest transcript id and distance:LF262365:15
MA497942:15
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:
  • LF262364:-74
  • MA497941:-74
  • ENSMUST00000141047.2:-143
  • NM_001362700.1:-143
  • NM_133649.2:-143
  • BC062099:-143
  • LF262366:199
  • MA497943:199
  • ENSMUST00000110987.9:238
  • ENSMUST00000028549.14:315
  • AF211854:315
  • AK137387:446
view more...
Gene_name:
Gene_symbol:
Gene_synonyms:
Gene_source:



TATA-Box annotation


Distance to TSS:166
Nearest PromoterID:NM_001362700.1
Entrez ID:Slc12a6
Nearest Unigene:XM_006498546
Nearest Refseq:
Nearest Ensembl:
Gene Name:
Gene Alias:
Gene Type:
CpG%:0.042553
GC%:0.625000
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):