rfmm_19972.1

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Basic information about the TSS


TSS ID:rfmm_19972.1
Species:mouse
Chr:chr2
Start:131075964
End:131076056
Strand:+
Source datasetsPRJDB10397|GSE117655|DRA000914
ProtocolC1CAGE|deepCAGE|CAGE_and_CAGEscan
TSS cluster detected*3

  * The number of TSS cluster called data-sets (maximum 5)


cCREs annotation


Description:PLS (EM10D2660831,EM10E1097538)
Category:PLS

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.



Gene and protein annotation


Nearest transcript id and distance:ENSMUST00000130597.8:0
ENSMUST00000041362.12:0
ENSMUST00000110199.3:0
AK161823:0
AK153748:0
AK028421:0
AK028708:0
BC020006:0
AK085038:0
GeneID:228607
HGNC/MGI_ID:MGI:2444773
UniProt_ID:Q3U5B1 Q8VCF0 S4R1W6
Nearer transcript ids and distances:
  • BC025825:2
  • BC031352:18
view more...
Gene_name:mitochondrial antiviral signaling protein
Gene_symbol:Mavs
Gene_synonyms:D430028G21Rik IPS-1
Gene_source:MGI:2444773



TATA-Box annotation


Distance to TSS:18
Nearest PromoterID:XM_036161359.1
Entrez ID:Mavs
Nearest Unigene:NM_144888
Nearest Refseq:
Nearest Ensembl:
Gene Name:mitochondrial antiviral signaling protein
Gene Alias:
Gene Type:
CpG%:0.065217
GC%:0.580645
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):



TSS expression

Expression data not found.