rfmm_33065.1

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Basic information about the TSS


TSS ID:rfmm_33065.1
TSS ID(Version3):mm_35017.1
Species:mouse
Chr:chr4
Start:3835534
End:3835655
Strand:-
Source datasetsFANTOM5|EPD|DRA000914|GSE117655|PRJDB10397
ProtocolCAGE|TSS_database|CAGE_and_CAGEscan|deepCAGE|C1CAGE
TSS cluster detected*5

  * The number of TSS cluster called data-sets (maximum 5)


cCREs annotation


Description:PLS,CTCF-bound (EM10D2720147,EM10E1121075)
Category:PLS

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.



Gene and protein annotation


Nearest transcript id and distance:AK014594:0
BC011323:0
BC090389:0
AK150867:0
AK150972:0
AK002405:0
AK145656:0
AK136398:0
GeneID:67427
HGNC/MGI_ID:MGI:1914677
UniProt_ID:
Nearer transcript ids and distances:
  • ENSMUST00000138502.2:-10
  • ENSMUST00000103009.5:46
  • ENSMUST00000130128.2:301
view more...
Gene_name:ribosomal protein S20
Gene_symbol:Rps20
Gene_synonyms:4632426K06Rik Dsk4
Gene_source:MGI:1914677



TATA-Box annotation


Distance to TSS:61
Nearest PromoterID:NM_026147.6
Entrez ID:Rps20
Nearest Unigene:NM_026147
Nearest Refseq:
Nearest Ensembl:
Gene Name:ribosomal protein S20
Gene Alias:
Gene Type:
CpG%:0.132231
GC%:0.696721
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):22(TGCTTTATAAGC,-,0.00),24(CTTTATAAGCGC,+,0.00)



TSS expression

Expression data not found.