rfmm_34328.1
Basic information about the TSS
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| Source datasets | DRA000914 | |||||||||||||
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| Protocol | CAGE_and_CAGEscan | |||||||||||||
| TSS cluster detected* | 1 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 5)
cCREs annotation
| Description: | PLS,CTCF-bound (EM10D2727678,EM10E1123513) |
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| Category: | PLS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 71 |
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| Nearest PromoterID: | NM_009503.4 |
| Entrez ID: | Vcp |
| Nearest Unigene: | NM_009503 |
| Nearest Refseq: | |
| Nearest Ensembl: | |
| Gene Name: | valosin containing protein |
| Gene Alias: | |
| Gene Type: | |
| CpG%: | 0.000000 |
| GC%: | 0.400000 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
TSS expression
Property "Nearest transcripts" (as page type) with input value "ENSMUST00000148182.2:1 AK167794:-14 BC049114:-17 BC043053:23 AK169140:28 AK146109:31 AK151109:33 AK151418:33 AK149931:35 AK153249:-40 AK159509:-41 ENSMUST00000030164.8:-69 NM_009503.4:-69 AK030751:98 AK160889:111 AK194951:239 AK201680:239 AK202683:239 AK190461:239 AK190822:239 AK199787:239" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.