rfmm_34329.1
Basic information about the TSS
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| Source datasets | PRJDB10397|GSE117655|DRA000914 | |||||||||||||
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| Protocol | C1CAGE|deepCAGE|CAGE_and_CAGEscan | |||||||||||||
| TSS cluster detected* | 3 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 5)
cCREs annotation
| Description: | PLS,CTCF-bound (EM10D2727678,EM10E1123513) |
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| Category: | PLS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 39 |
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| Nearest PromoterID: | NM_009503.4 |
| Entrez ID: | Vcp |
| Nearest Unigene: | NM_009503 |
| Nearest Refseq: | |
| Nearest Ensembl: | |
| Gene Name: | valosin containing protein |
| Gene Alias: | |
| Gene Type: | |
| CpG%: | 0.030303 |
| GC%: | 0.500000 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
TSS expression
Property "Nearest transcripts" (as page type) with input value "AK153012:16 AK159177:17 AK028264:18 AK159475:18 ENSMUST00000148182.2:19 ENSMUST00000030164.8:-22 NM_009503.4:-22 BC043053:41 AK169140:46 AK146109:49 AK151109:51 AK151418:51 AK149931:53 AK030751:116 AK160889:129 AK194951:257 AK201680:257 AK202683:257 AK190461:257 AK190822:257 AK199787:257" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.