rfmm_40556.1

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Basic information about the TSS


TSS ID:rfmm_40556.1
Species:mouse
Chr:chr4
Start:138802869
End:138802886
Strand:-
Source datasetsFANTOM5
ProtocolCAGE
TSS cluster detected*1

  * The number of TSS cluster called data-sets (maximum 5)


cCREs annotation


Description:PLS (EM10D2758098,EM10E1136575)
Category:PLS

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.



Gene and protein annotation


Nearest transcript id and distance:ENSMUST00000105802.8:0
AK134977:0
GeneID:15565
HGNC/MGI_ID:MGI:1196627
UniProt_ID:Q14AW8 Q3UY46
Nearer transcript ids and distances:
    Gene_name:5-hydroxytryptamine (serotonin) receptor 6
    Gene_symbol:Htr6
    Gene_synonyms:5-HT6
    Gene_source:MGI:1196627



    TATA-Box annotation


    Distance to TSS:4
    Nearest PromoterID:NM_001377096.1
    Entrez ID:Htr6
    Nearest Unigene:NM_021358
    Nearest Refseq:
    Nearest Ensembl:
    Gene Name:5-hydroxytryptamine (serotonin) receptor 6
    Gene Alias:
    Gene Type:
    CpG%:0.176471
    GC%:0.722222
    TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):



    TSS expression

    Expression data not found.