rfmm_43244.1

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Basic information about the TSS


TSS ID:rfmm_43244.1
Species:mouse
Chr:chr5
Start:21942141
End:21942177
Strand:+
Source datasetsPRJDB10397|GSE117655|DRA000914
ProtocolC1CAGE|deepCAGE|CAGE_and_CAGEscan
TSS cluster detected*3

  * The number of TSS cluster called data-sets (maximum 5)


cCREs annotation


Description:PLS,CTCF-bound (EM10D2769591,EM10E1141757)
Category:PLS

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.



Gene and protein annotation


Nearest transcript id and distance:BC087943:0
AK152673:0
AK013995:0
BC060662:0
BC065095:0
GeneID:73078
HGNC/MGI_ID:MGI:1920328
UniProt_ID:Q9CXT8
Nearer transcript ids and distances:
  • ENSMUST00000030882.12:-2
  • ENSMUST00000125693.8:-2
  • AK169417:25
  • KT324687:77
view more...
Gene_name:peptidase (mitochondrial processing) beta
Gene_symbol:Pmpcb
Gene_synonyms:3110004O18Rik MPP11 MPPP52
Gene_source:MGI:1920328



TATA-Box annotation


Distance to TSS:1
Nearest PromoterID:NM_028431.2
Entrez ID:Pmpcb
Nearest Unigene:XR_004942576
Nearest Refseq:
Nearest Ensembl:
Gene Name:peptidase (mitochondrial processing) beta
Gene Alias:
Gene Type:
CpG%:0.055556
GC%:0.540541
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):



TSS expression

Expression data not found.