rfmm_43702.1

Basic information about the TSS

TSS ID:	rfmm_43702.1
Species:	mouse
Chr:	chr5

Start:	29940836
End:	29940848
Strand:	+

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 5)

cCREs annotation

Description:	PLS (EM10D2772065,EM10E1142661)
Category:	PLS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	NM_001037941.3:48 NM_001127367.1:48 NM_011847.4:48 NM_001359198.1:48 NM_001037940.4:48 NR_152863.1:48
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:	ENSMUST00000114839.8:90 AK134387:90 AK144182:124 NM_001378835.1:129 AK133805:131 AK152626:135 ENSMUST00000198694.5:139 AK151219:141 AK032039:141 AK169332:142 ENSMUST00000012734.10:145 AK005680:145 AB028854:146 AF035962:147 ENSMUST00000008733.15:-150 BC083349:156 BC003702:166 AK153091:169 ENSMUST00000127753.2:174 AK151752:175 AK152632:175 AK169767:178 ENSMUST00000196528.5:183 AK208008:215 view more...

Gene_name:
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	-54
Nearest PromoterID:	NM_001037941.3
Entrez ID:	Dnajb6
Nearest Unigene:	NM_001127367
Nearest Refseq:
Nearest Ensembl:
Gene Name:
Gene Alias:
Gene Type:
CpG%:	0.083333
GC%:	0.692308
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

Property "Nearest transcripts" (as page type) with input value "ENSMUST00000114839.8:90 AK134387:90 AK144182:124 NM_001378835.1:129 AK133805:131 AK152626:135 ENSMUST00000198694.5:139 AK151219:141 AK032039:141 AK169332:142 ENSMUST00000012734.10:145 AK005680:145 AB028854:146 AF035962:147 ENSMUST00000008733.15:-150 BC083349:156 BC003702:166 AK153091:169 ENSMUST00000127753.2:174 AK151752:175 AK152632:175 AK169767:178 ENSMUST00000196528.5:183 AK208008:215" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.