rfmm_4711.1

Basic information about the TSS

TSS ID:	rfmm_4711.1
Species:	mouse
Chr:	chr1

Start:	90771639
End:	90771705
Strand:	-

Source datasets

GSE117655|DRA000914

Protocol

deepCAGE|CAGE_and_CAGEscan

TSS cluster detected^*

2

* The number of TSS cluster called data-sets (maximum 5)

cCREs annotation

Description:	PLS (EM10D1077883,EM10E0445684)
Category:	PLS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	ENSMUST00000188587.7:0 ENSMUST00000056925.16:0 ENSMUST00000097653.11:0 ENSMUST00000130846.9:0 ENSMUST00000187753.2:0 AF034136:0
GeneID:	12835
HGNC/MGI_ID:	MGI:88461
UniProt_ID:	A0A087WQN9 A0A087WS16 D3YWD1 E9PWQ3 J3QQ16 Q9Z0I9
Nearer transcript ids and distances:	LF217113:33 MA452690:33 LF217111:104 MA452688:104 AF064749:145 view more...

Gene_name:	collagen, type VI, alpha 3
Gene_symbol:	Col6a3
Gene_synonyms:	Col6a-3
Gene_source:	MGI:88461

TATA-Box annotation

Distance to TSS:	21
Nearest PromoterID:	NM_001243008.1
Entrez ID:	Col6a3
Nearest Unigene:	NM_001243008
Nearest Refseq:
Nearest Ensembl:
Gene Name:	collagen, type VI, alpha 3
Gene Alias:
Gene Type:
CpG%:	0.000000
GC%:	0.552239
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

TSS expression

Expression data not found.