rfmm_55653.1
Basic information about the TSS
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| Source datasets | GSE117655|DRA000914 | |||||||||||||
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| Protocol | deepCAGE|CAGE_and_CAGEscan | |||||||||||||
| TSS cluster detected* | 2 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 5)
cCREs annotation
| Description: | PLS,CTCF-bound (EM10D2824234,EM10E1164679) |
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| Category: | PLS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 58 |
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| Nearest PromoterID: | NM_001079901.1 |
| Entrez ID: | Repin1 |
| Nearest Unigene: | NM_001079901 |
| Nearest Refseq: | |
| Nearest Ensembl: | |
| Gene Name: | predicted gene 44965; replication initiator 1 |
| Gene Alias: | |
| Gene Type: | |
| CpG%: | 0.047619 |
| GC%: | 0.636364 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
TSS expression
Property "Nearest transcripts" (as page type) with input value "BC092301:-4 BC013644:-4 AK170797:-13 ENSMUST00000135151.3:-31 AK206412:39 ENSMUST00000118229.2:-40 ENSMUST00000154010.8:-48 ENSMUST00000009420.15:-48 ENSMUST00000163452.7:-48 NM_001079905.1:-48 NM_175099.3:-48 NM_001079904.1:-48 NM_001079903.1:-48 NM_001079902.1:-48 NM_001079901.1:-48 ENSMUST00000150030.2:367" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.