rfmm_76437.1

From referenceTSS
Jump to: navigation, search

Basic information about the TSS


TSS ID:rfmm_76437.1
TSS ID(Version3):mm_70635.1
Species:mouse
Chr:chr8
Start:13919674
End:13919769
Strand:+
Source datasetsFANTOM5|EPD|DRA000914|PRJDB10397|GSE117655
ProtocolCAGE|TSS_database|CAGE_and_CAGEscan|C1CAGE|deepCAGE
TSS cluster detected*5

  * The number of TSS cluster called data-sets (maximum 5)


cCREs annotation


Description:PLS,CTCF-bound (EM10D2900492,EM10E1197764)
Category:PLS

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.



Gene and protein annotation


Nearest transcript id and distance:ENSMUST00000128557.3:0
AK132164:0
AK170835:0
AK139963:0
AK133990:0
BC028991:0
AK129444:0
GeneID:101994
HGNC/MGI_ID:MGI:1196398
UniProt_ID:Q8K327
Nearer transcript ids and distances:
  • ENSMUST00000051870.8:-33
  • NM_181854.2:-33
  • NM_001363455.1:-33
view more...
Gene_name:chromosome alignment maintaining phosphoprotein 1
Gene_symbol:Champ1
Gene_synonyms:D8Ertd457e D8Ertd569e Zfp828
Gene_source:MGI:1196398



TATA-Box annotation


Distance to TSS:80
Nearest PromoterID:NM_181854.2
Entrez ID:Champ1
Nearest Unigene:NM_181854
Nearest Refseq:
Nearest Ensembl:
Gene Name:chromosome alignment maintaining phosphoprotein 1
Gene Alias:
Gene Type:
CpG%:0.126316
GC%:0.708333
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):



TSS expression

Expression data not found.