rfmm_79574.1

From referenceTSS
Jump to: navigation, search

Basic information about the TSS


TSS ID:rfmm_79574.1
TSS ID(Version3):mm_72186.1
Species:mouse
Chr:chr8
Start:73197719
End:73197896
Strand:+
Source datasetsFANTOM5|EPD|GSE117655|DRA000914|PRJDB10397
ProtocolCAGE|TSS_database|deepCAGE|CAGE_and_CAGEscan|C1CAGE
TSS cluster detected*5

  * The number of TSS cluster called data-sets (maximum 5)


cCREs annotation


Description:PLS (EM10D2915011,EM10E1203336)
Category:PLS

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.



Gene and protein annotation


Nearest transcript id and distance:ENSMUST00000064853.13:0
ENSMUST00000121902.2:0
AK133815:0
BC008558:0
AK139332:0
AK089918:0
GeneID:72254
HGNC/MGI_ID:MGI:1919504
UniProt_ID:E9Q7C0 Q922C1
Nearer transcript ids and distances:
    Gene_name:RIKEN cDNA 1700030K09 gene
    Gene_symbol:1700030K09Rik
    Gene_synonyms:
    Gene_source:MGI:1919504



    TATA-Box annotation


    Distance to TSS:-38
    Nearest PromoterID:XR_870463.3
    Entrez ID:1700030K09Rik
    Nearest Unigene:XM_011242328
    Nearest Refseq:
    Nearest Ensembl:
    Gene Name:RIKEN cDNA 1700030K09 gene
    Gene Alias:
    Gene Type:
    CpG%:0.045198
    GC%:0.573034
    TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):



    TSS expression

    Expression data not found.