rfmm_80411.1
Basic information about the TSS
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| Source datasets | FANTOM5|PRJDB10397|GSE117655|DRA000914 | |||||||||||||||
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| Protocol | CAGE|C1CAGE|deepCAGE|CAGE_and_CAGEscan | |||||||||||||||
| TSS cluster detected* | 4 | |||||||||||||||
* The number of TSS cluster called data-sets (maximum 5)
cCREs annotation
| Description: | PLS (EM10D2918494,EM10E1204634) |
|---|---|
| Category: | PLS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 12 |
|---|---|
| Nearest PromoterID: | XM_036153863.1 |
| Entrez ID: | Trmt1 |
| Nearest Unigene: | XM_036153862 |
| Nearest Refseq: | |
| Nearest Ensembl: | |
| Gene Name: | tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase; tRNA methyltransferase 1 |
| Gene Alias: | |
| Gene Type: | |
| CpG%: | 0.068493 |
| GC%: | 0.608108 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
TSS expression
Property "Nearest transcripts" (as page type) with input value "ENSMUST00000131700.8:-1 ENSMUST00000109768.9:-6 ENSMUST00000176053.8:-13 ENSMUST00000128537.9:-13 ENSMUST00000177084.8:-13 ENSMUST00000109767.9:-23 NM_001164560.1:-23 NM_001164559.1:-23 NM_198020.2:-23 ENSMUST00000125370.10:121 ENSMUST00000175784.2:134 ENSMUST00000177286.8:289 LF301219:396 MA536796:396 ENSMUST00000001974.11:-404" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.