rfmm_123854.1

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Basic information about the TSS


TSS ID:rfmm_123854.1
Species:mouse
Chr:chr13
Start:49494929
End:49494939
Strand:+
Source datasetsFANTOM5
ProtocolCAGE
TSS cluster detected*1

  * The number of TSS cluster called data-sets (maximum 5)


cCREs annotation


Description:PLS,CTCF-bound (EM10D1356519,EM10E0560302)
Category:PLS

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.



Gene and protein annotation


Nearest transcript id and distance:NM_001039180.2:86
NM_029791.4:86
NM_001039179.2:86
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:
  • ENSMUST00000048544.14:122
  • AK122348:122
  • ENSMUST00000110084.4:128
  • AK171300:128
  • AK156407:132
  • ENSMUST00000110085.11:133
  • AJ250106:137
  • BC032198:138
  • AK177908:356
  • AK002683:403
view more...
Gene_name:
Gene_symbol:
Gene_synonyms:
Gene_source:



TATA-Box annotation


Distance to TSS:-91
Nearest PromoterID:NM_001039180.2
Entrez ID:Bicd2
Nearest Unigene:NM_001039179
Nearest Refseq:
Nearest Ensembl:
Gene Name:
Gene Alias:
Gene Type:
CpG%:0.000000
GC%:0.363636
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):