rfmm_197.1

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Basic information about the TSS


TSS ID:rfmm_197.1
Species:mouse
Chr:chr1
Start:9770569
End:9770611
Strand:-
Source datasetsFANTOM5
ProtocolCAGE
TSS cluster detected*1

  * The number of TSS cluster called data-sets (maximum 5)


cCREs annotation


Description:PLS,CTCF-bound (EM10D2263319,EM10E0932477)
Category:PLS

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.



Gene and protein annotation


Nearest transcript id and distance:LF192561:134
MA428138:134
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:
  • ENSMUST00000088658.11:135
  • NM_008651.3:135
  • NM_001290397.1:135
  • L35261:135
  • LF204550:135
  • MA440127:135
  • LF214176:299
  • MA449753:299
  • ENSMUST00000115468.9:320
  • BC103533:390
  • X82327:390
  • BC101945:391
  • BC103534:391
view more...
Gene_name:
Gene_symbol:
Gene_synonyms:
Gene_source:



TATA-Box annotation


Distance to TSS:74
Nearest PromoterID:XM_011238349.3
Entrez ID:Mybl1
Nearest Unigene:NM_001290397
Nearest Refseq:
Nearest Ensembl:
Gene Name:
Gene Alias:
Gene Type:
CpG%:0.119048
GC%:0.674419
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):