rfmm_552.1

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Basic information about the TSS


TSS ID:rfmm_552.1
Species:mouse
Chr:chr1
Start:21149387
End:21149467
Strand:-
Source datasetsPRJDB10397|GSE117655|DRA000914
ProtocolC1CAGE|deepCAGE|CAGE_and_CAGEscan
TSS cluster detected*3

  * The number of TSS cluster called data-sets (maximum 5)


cCREs annotation


Description:PLS (EM10D1042317,EM10E0432840)
Category:PLS

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.



Gene and protein annotation


Nearest transcript id and distance:ENSMUST00000037998.6:0
BC018212:0
AK082751:0
GeneID:170829
HGNC/MGI_ID:MGI:1924817
UniProt_ID:Q924Z5
Nearer transcript ids and distances:
  • AY029530:1
Gene_name:translocating chain-associating membrane protein 2
Gene_symbol:Tram2
Gene_synonyms:C330003D03Rik
Gene_source:MGI:1924817



TATA-Box annotation


Distance to TSS:22
Nearest PromoterID:NM_177409.3
Entrez ID:Tram2
Nearest Unigene:NM_177409
Nearest Refseq:
Nearest Ensembl:
Gene Name:translocating chain-associating membrane protein 2
Gene Alias:
Gene Type:
CpG%:0.137500
GC%:0.765432
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):



TSS expression

Expression data not found.