rfmm_829.1

From referenceTSS
Jump to: navigation, search

Basic information about the TSS


TSS ID:rfmm_829.1
Species:mouse
Chr:chr1
Start:34050646
End:34050683
Strand:+
Source datasetsGSE117655|DRA000914
ProtocoldeepCAGE|CAGE_and_CAGEscan
TSS cluster detected*2

  * The number of TSS cluster called data-sets (maximum 5)


cCREs annotation


Description:pELS,CTCF-bound (EM10D2266930,EM10E0933600)
Category:pELS

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.



Gene and protein annotation


Nearest transcript id and distance:NM_133833.4:0
NM_134448.4:0
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:
  • ENSMUST00000097786.10:211
  • ENSMUST00000115104.10:223
  • ENSMUST00000097785.10:223
  • U22452:223
  • AF396879:223
  • AF396878:223
view more...
Gene_name:
Gene_symbol:
Gene_synonyms:
Gene_source:



TATA-Box annotation


Distance to TSS:-12
Nearest PromoterID:NM_134448.4
Entrez ID:Dst
Nearest Unigene:XM_006495691
Nearest Refseq:
Nearest Ensembl:
Gene Name:
Gene Alias:
Gene Type:
CpG%:0.162162
GC%:0.763158
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):