TSS: Hg 152272.1: Difference between revisions
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{{TSSDetail | {{TSSDetail | ||
|all_trans=AB384460:495 | |all_trans=LF340586:12 MA576163:12 LF340588:211 MA576165:211 LF340589:366 MA576166:366 LF340583:-456 MA576160:-456 HM005593:489 AB384460:495 | ||
|chr=chr16 | |chr=chr16 | ||
|cpg_percent=0.01 | |cpg_percent=0.01 | ||
|distance= | |distance=12 | ||
|distance_to_tss= | |distance_to_tss=3224 | ||
|end=2755867 | |end=2755867 | ||
|end_of_center_position=2755862 | |end_of_center_position=2755862 | ||
|entrez_id= | |entrez_id=23524 | ||
|gc_percent=0.452736 | |gc_percent=0.452736 | ||
|gene_alias=- | |gene_alias=300-KD{{!}}CWF21{{!}}Cwc21{{!}}HSPC075{{!}}SRL300{{!}}SRm300 | ||
|gene_description= | |gene_description=serine/arginine repetitive matrix 2 | ||
|gene_id=23524 | |gene_id=23524 | ||
|gene_name= | |gene_name=SRRM2 | ||
|gene_source=HGNC:16639 | |gene_source=HGNC:16639 | ||
|gene_symbol=SRRM2 | |gene_symbol=SRRM2 | ||
|gene_synonyms=Cwc21 KIAA0324 SRL300 SRm300 | |gene_synonyms=Cwc21 KIAA0324 SRL300 SRm300 | ||
|gene_type= | |gene_type=protein-coding | ||
|hgnc_mgi_id=HGNC:16639 | |hgnc_mgi_id=HGNC:16639 | ||
|nearest_ensembl= | |nearest_ensembl=ENSG00000167978 | ||
|nearest_promoter_id= | |nearest_promoter_id=NM_016333 | ||
|nearest_refseq= | |nearest_refseq=NM_016333 | ||
|nearest_unigene=Hs. | |nearest_unigene=Hs.433343 | ||
|num_trans= | |num_trans=10 | ||
|species=human | |species=human | ||
|start=2755856 | |start=2755856 | ||
|start_of_center_position=2755861 | |start_of_center_position=2755861 | ||
|strand=+ | |strand=+ | ||
|transcript_name= | |transcript_name=LF340586 MA576163 | ||
|tss_classification= | |tss_classification=yes | ||
|tss_id=hg_152272.1 | |tss_id=hg_152272.1 | ||
|tss_score=1 | |tss_score=1 | ||
|uniprot_id= | |uniprot_id= | ||
}} | }} | ||
Latest revision as of 11:20, 13 July 2021
Basic information about the TSS
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| TSS cluster detected* |
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* The number of TSS cluster called studies (maximum 16)
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 3224 |
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| Nearest PromoterID: | NM_016333 |
| Entrez ID: | 23524 |
| Nearest Unigene: | Hs.433343 |
| Nearest Refseq: | NM_016333 |
| Nearest Ensembl: | ENSG00000167978 |
| Gene Name: | SRRM2 |
| Gene Alias: | 300-KD|CWF21|Cwc21|HSPC075|SRL300|SRm300 |
| Gene Description: | serine/arginine repetitive matrix 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.01 |
| GC%: | 0.452736 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
TSS expression
Expression data not found.