TSS: Hg 159281.1: Difference between revisions

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|PQLC5=
|PQLC5=
|SL15=
|SL15=
|all_trans=ENST00000571391.5:0 ENST00000578267.5:0 ENST00000585188.5:0 ENST00000359822.10:0 ENST00000580708.5:0 ENST00000580834.5:0 ENST00000572836.5:0 ENST00000577088.5:0 ENST00000584378.5:0 ENST00000423172.6:0 ENST00000576066.5:0 ENST00000584479.5:0 ENST00000572719.5:0 ENST00000579445.5:0 ENST00000614740.4:0 uc060aso.1:0 uc060asp.1:0 uc060asq.1:0 uc060asr.1:0 uc060ass.1:0 uc060ast.1:0 uc060asu.1:0 uc060asv.1:0 uc060asw.1:0 uc010vuc.2:0 uc060asx.1:0 uc060asy.1:0 uc060asz.1:0 uc060ata.1:0 uc060atb.1:0 AK225401:0 AK075299:0 AF038961:0 AK027742:0 AK297691:0 AK314527:0 AK297001:0 AK225432:0 AK055923:0 AK300083:0 AK300140:0 CU674920:0 HQ448685:0 KJ898044:0 KR709838:0 KR709839:0 KR709840:0 DQ499597:0 KU178478:0 KU178479:0 KU178480:0 ENST00000581886.5:2 uc060atc.1:2 ENST00000575256.1:7 uc060atd.1:7 BC001898:-7 ENST00000570458.5:11 uc060ate.1:11 ENST00000585217.5:12 uc060atf.1:12 ENST00000396501.8:-15 uc060asn.1:-15 ENST00000571822.5:-22 ENST00000576272.5:22 uc060asm.1:-22 uc060atg.1:22 ENST00000581380.1:30 uc060ath.1:30 ENST00000574558.1:32 uc060ati.1:32 AF059752:-35 DQ585508:63 ENST00000572936.5:-177 uc060asl.1:-177 ENST00000250124.10:-196 ENST00000620608.4:-196 ENST00000621041.4:-196 NM_004870:-196 NR_024603:-196 uc002ghw.4:-196 uc060asj.1:-196 uc060ask.1:-196 ENST00000582151.1:-314 uc060asi.1:-314
|all_trans=HGNC:7207
|chr=chr17
|chr=chr17
|cpg_percent=0.12
|cpg_percent=0.12
|distance=0
|distance=0
|distance_to_tss=206
|distance_to_tss=1
|end=7583863
|end=7583863
|end_of_center_position=7583853
|end_of_center_position=7583853
|entrez_id=9526
|entrez_id=9526
|gc_percent=0.60199
|gc_percent=0.60199
|gene_alias=CDGIF
|gene_alias=CDGIF{{!}}HBEBP2BPA{{!}}Lec35{{!}}My008{{!}}PP3958{{!}}PQLC5{{!}}SL15{{!}}SLC66A5
|gene_description=mannose-P-dolichol utilization defect 1
|gene_description=mannose-P-dolichol utilization defect 1
|gene_id=9526
|gene_id=9526
Line 21: Line 21:
|gene_source=HGNC:7207
|gene_source=HGNC:7207
|gene_symbol=MPDU1
|gene_symbol=MPDU1
|gene_synonyms=CDGIf Lec35 PQLC5 SL15
|gene_synonyms=CDGIf Lec35 PQLC5 SL15 SLC66A5
|gene_type=protein-coding
|gene_type=protein-coding
|hgnc_mgi_id=HGNC:7207
|hgnc_mgi_id=HGNC:7207
Line 28: Line 28:
|nearest_refseq=NM_004870
|nearest_refseq=NM_004870
|nearest_unigene=Hs.246381
|nearest_unigene=Hs.246381
|num_trans=84
|num_trans=9526
|species=human
|species=human
|start=7583842
|start=7583842
|start_of_center_position=7583852
|start_of_center_position=7583852
|strand=+
|strand=+
|transcript_name=ENST00000571391.5 ENST00000578267.5 ENST00000585188.5 ENST00000359822.10 ENST00000580708.5 ENST00000580834.5 ENST00000572836.5 ENST00000577088.5 ENST00000584378.5 ENST00000423172.6 ENST00000576066.5 ENST00000584479.5 ENST00000572719.5 ENST00000579445.5 ENST00000614740.4 uc060aso.1 uc060asp.1 uc060asq.1 uc060asr.1 uc060ass.1 uc060ast.1 uc060asu.1 uc060asv.1 uc060asw.1 uc010vuc.2 uc060asx.1 uc060asy.1 uc060asz.1 uc060ata.1 uc060atb.1 AK225401 AK075299 AF038961 AK027742 AK297691 AK314527 AK297001 AK225432 AK055923 AK300083 AK300140 CU674920 HQ448685 KJ898044 KR709838 KR709839 KR709840 DQ499597 KU178478 KU178479 KU178480
|transcript_name=ENST00000571391.5 ENST00000578267.5 ENST00000585188.5 ENST00000359822.10 ENST00000580708.5 ENST00000580834.5 ENST00000572836.5 ENST00000577088.5 ENST00000250124.11 ENST00000584378.5 ENST00000423172.6 ENST00000576066.5 ENST00000584479.5 ENST00000572719.5 ENST00000579445.5 AK225401 AK075299 AF038961 AK027742 AK297691 AK314527 AK297001 AK225432 AK055923 AK300083 AK300140 CU674920 HQ448685 KR709838 KR709839 KR709840 KU178478 KU178479 KU178480 DQ499597
|tss_classification=yes
|tss_classification=yes
|tss_id=hg_159281.1
|tss_id=hg_159281.1

Latest revision as of 15:04, 20 July 2021

Basic information about the TSS

TSS ID:hg_159281.1
Species:human
Chr:chr17
Start:7583842
End:7583863
Strand:+
TSS cluster detected*

  * The number of TSS cluster called studies (maximum 16)



Gene and protein annotation

Transcript_name:ENST00000571391.5 ENST00000578267.5 ENST00000585188.5 ENST00000359822.10 ENST00000580708.5 ENST00000580834.5 ENST00000572836.5 ENST00000577088.5 ENST00000250124.11 ENST00000584378.5 ENST00000423172.6 ENST00000576066.5 ENST00000584479.5 ENST00000572719.5 ENST00000579445.5 AK225401 AK075299 AF038961 AK027742 AK297691 AK314527 AK297001 AK225432 AK055923 AK300083 AK300140 CU674920 HQ448685 KR709838 KR709839 KR709840 KU178478 KU178479 KU178480 DQ499597
Distance:0
GeneID:9526
HGNC/MGI_ID:HGNC:7207
UniProt_ID:A0A0S2Z4T4 A0A0S2Z4W8 B2RB74 B4DTB4 I3L1D2 I3L295 I3L4E0 J3KT75 J3QRD5 J3QS48 O75352 Q1HDL3 Q96K24 Q96N63
Gene_name:mannose-P-dolichol utilization defect 1
Gene_symbol:MPDU1
Gene_synonyms:CDGIf Lec35 PQLC5 SL15 SLC66A5
Gene_source:HGNC:7207



TATA-Box annotation

Distance to TSS:1
Nearest PromoterID:NM_004870
Entrez ID:9526
Nearest Unigene:Hs.246381
Nearest Refseq:NM_004870
Nearest Ensembl:ENSG00000129255
Gene Name:mannose-P-dolichol utilization defect 1
Gene Alias:CDGIF|HBEBP2BPA|Lec35|My008|PP3958|PQLC5|SL15|SLC66A5
Gene Description:mannose-P-dolichol utilization defect 1
Gene Type:protein-coding
CpG%:0.12
GC%:0.60199
TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation):



TSS expression

Expression data not found.

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