TSS: Mm 16427.1: Difference between revisions
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{{TSSDetail | {{TSSDetail | ||
|Gm6307= | |Gm6307= | ||
|all_trans= | |all_trans=MGI:3649026 | ||
|chr=chr2 | |chr=chr2 | ||
|cpg_percent=0.055 | |cpg_percent=0.055 | ||
| Line 10: | Line 10: | ||
|entrez_id=622283 | |entrez_id=622283 | ||
|gc_percent=0.646766 | |gc_percent=0.646766 | ||
|gene_alias=EG622283 | |gene_alias=EG622283{{!}}Gm6307 | ||
|gene_description=Mir1a-1 and Mir133a-2 host gene | |gene_description=Mir1a-1 and Mir133a-2 host gene | ||
|gene_id=622283 | |gene_id=622283 | ||
|gene_name= | |gene_name=Mir1a-1 and Mir133a-2 host gene | ||
|gene_source=MGI:3649026 | |gene_source=MGI:3649026 | ||
|gene_symbol= | |gene_symbol=Mir1a-1hg | ||
|gene_synonyms= | |gene_synonyms=Gm6307 | ||
|gene_type=ncRNA | |gene_type=ncRNA | ||
|hgnc_mgi_id=MGI:3649026 | |hgnc_mgi_id=MGI:3649026 | ||
| Line 23: | Line 23: | ||
|nearest_refseq=NR_045331 | |nearest_refseq=NR_045331 | ||
|nearest_unigene=Mm.447602 | |nearest_unigene=Mm.447602 | ||
|num_trans= | |num_trans=622283 | ||
|species=mouse | |species=mouse | ||
|start=180385599 | |start=180385599 | ||
|start_of_center_position=180385608 | |start_of_center_position=180385608 | ||
|strand=+ | |strand=+ | ||
|tata_box= | |tata_box=-36(GGGTATATAAGA,-,0.00) | ||
|transcript_name= | |transcript_name=AK140896 | ||
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=mm_16427.1 | |tss_id=mm_16427.1 | ||
Latest revision as of 10:02, 27 July 2021
Basic information about the TSS
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| TSS cluster detected* |
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* The number of TSS cluster called studies (maximum 5)
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 4 |
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| Nearest PromoterID: | NR_045331 |
| Entrez ID: | 622283 |
| Nearest Unigene: | Mm.447602 |
| Nearest Refseq: | NR_045331 |
| Nearest Ensembl: | |
| Gene Name: | Mir1a-1 and Mir133a-2 host gene |
| Gene Alias: | EG622283|Gm6307 |
| Gene Description: | Mir1a-1 and Mir133a-2 host gene |
| Gene Type: | ncRNA |
| CpG%: | 0.055 |
| GC%: | 0.646766 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -36(GGGTATATAAGA,-,0.00) |
TSS expression
Expression data not found.