TSS: Hg 10077.1: Difference between revisions
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.18 |distance_to_tss=-66714 |entrez_id=9341 |gc_percent=0.825871 |gene_alias=CEB |gene_description=vesicle associated membrane protein 3 |gene_name=V...") |
No edit summary |
||
(2 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
|chr=chr1 | |||
|cpg_percent=0.18 | |cpg_percent=0.18 | ||
|distance_to_tss=- | |distance=NA | ||
|entrez_id= | |distance_to_tss=-181 | ||
|end=7704573 | |||
|end_of_center_position=7704555 | |||
|entrez_id=23261 | |||
|gc_percent=0.825871 | |gc_percent=0.825871 | ||
|gene_alias= | |gene_alias=CANPMR | ||
|gene_description= | |gene_description=calmodulin binding transcription activator 1 | ||
|gene_name= | |gene_name=CAMTA1 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
|nearest_ensembl= | |nearest_ensembl=ENSG00000171735 | ||
|nearest_promoter_id= | |nearest_promoter_id=NM_001349622 | ||
|nearest_refseq= | |nearest_refseq=NM_015215 | ||
|nearest_unigene=Hs. | |nearest_unigene=Hs.397705 | ||
|num_trans=0 | |||
|species=human | |||
|start=7704536 | |||
|start_of_center_position=7704554 | |||
|strand=- | |||
|transcript_name= | |||
|tss_classification=yes | |||
|tss_id=hg_10077.1 | |tss_id=hg_10077.1 | ||
|tss_score=1 | |||
}} | }} |
Latest revision as of 15:27, 15 June 2021
Basic information about the TSS
|
| |||||||||||||
TSS cluster detected* |
---|
* The number of TSS cluster called studies (maximum 16)
Gene and protein annotation
|
|
TATA-Box annotation
Distance to TSS: | -181 |
---|---|
Nearest PromoterID: | NM_001349622 |
Entrez ID: | 23261 |
Nearest Unigene: | Hs.397705 |
Nearest Refseq: | NM_015215 |
Nearest Ensembl: | ENSG00000171735 |
Gene Name: | CAMTA1 |
Gene Alias: | CANPMR |
Gene Description: | calmodulin binding transcription activator 1 |
Gene Type: | protein-coding |
CpG%: | 0.18 |
GC%: | 0.825871 |
TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |