TSS: Hg 100790.1: Difference between revisions
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.03 |distance_to_tss=-223 |entrez_id=103352539 |gc_percent=0.537313 |gene_alias=- |gene_description=long intergenic non-protein coding RNA 1410 |gene...") |
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{{TSSDetail | {{TSSDetail | ||
|chr=chr9 | |||
|cpg_percent=0.03 | |cpg_percent=0.03 | ||
|distance=NA | |||
|distance_to_tss=-223 | |distance_to_tss=-223 | ||
|end=62801245 | |||
|end_of_center_position=62801243 | |||
|entrez_id=103352539 | |entrez_id=103352539 | ||
|gc_percent=0.537313 | |gc_percent=0.537313 | ||
| Line 12: | Line 16: | ||
|nearest_refseq=NR_121647 | |nearest_refseq=NR_121647 | ||
|nearest_unigene=Hs.351215 | |nearest_unigene=Hs.351215 | ||
|tata_box= | |num_trans=0 | ||
|species=human | |||
|start=62801239 | |||
|start_of_center_position=62801242 | |||
|strand=- | |||
|tata_box=65(CCCTCTTAAGGG,-,0.00),66(CCTCTTAAGGGC,+,0.00) | |||
|transcript_name= | |||
|tss_classification=yes | |||
|tss_id=hg_100790.1 | |tss_id=hg_100790.1 | ||
|tss_score=1 | |||
}} | }} | ||
Latest revision as of 15:28, 15 June 2021
Basic information about the TSS
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| TSS cluster detected* |
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* The number of TSS cluster called studies (maximum 16)
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | -223 |
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| Nearest PromoterID: | NR_121647 |
| Entrez ID: | 103352539 |
| Nearest Unigene: | Hs.351215 |
| Nearest Refseq: | NR_121647 |
| Nearest Ensembl: | ENSG00000238113 |
| Gene Name: | LINC01410 |
| Gene Alias: | - |
| Gene Description: | long intergenic non-protein coding RNA 1410 |
| Gene Type: | ncRNA |
| CpG%: | 0.03 |
| GC%: | 0.537313 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | 65(CCCTCTTAAGGG,-,0.00),66(CCTCTTAAGGGC,+,0.00) |