TSS: Hg 100834.1: Difference between revisions
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.015 |distance_to_tss=617 |entrez_id=138255 |gc_percent=0.537313 |gene_alias=- |gene_description=chromosome 9 open reading frame 135 |gene_name=C9orf...") |
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{{TSSDetail | {{TSSDetail | ||
|chr=chr9 | |||
|cpg_percent=0.015 | |cpg_percent=0.015 | ||
|distance_to_tss= | |distance=NA | ||
|distance_to_tss=605 | |||
|end=69821427 | |||
|end_of_center_position=69821422 | |||
|entrez_id=138255 | |entrez_id=138255 | ||
|gc_percent=0.537313 | |gc_percent=0.537313 | ||
| Line 9: | Line 13: | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
|nearest_ensembl=ENSG00000204711 | |nearest_ensembl=ENSG00000204711 | ||
|nearest_promoter_id= | |nearest_promoter_id=NM_001010940 | ||
|nearest_refseq=NM_001010940 | |nearest_refseq=NM_001010940 | ||
|nearest_unigene=Hs.444459 | |nearest_unigene=Hs.444459 | ||
|tata_box= | |num_trans=0 | ||
|species=human | |||
|start=69821416 | |||
|start_of_center_position=69821421 | |||
|strand=- | |||
|tata_box=-31(CTATTTATACAC,+,0.00) | |||
|transcript_name= | |||
|tss_classification=no | |||
|tss_id=hg_100834.1 | |tss_id=hg_100834.1 | ||
|tss_score=1 | |||
}} | }} | ||
Latest revision as of 15:29, 15 June 2021
Basic information about the TSS
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| TSS cluster detected* |
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* The number of TSS cluster called studies (maximum 16)
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 605 |
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| Nearest PromoterID: | NM_001010940 |
| Entrez ID: | 138255 |
| Nearest Unigene: | Hs.444459 |
| Nearest Refseq: | NM_001010940 |
| Nearest Ensembl: | ENSG00000204711 |
| Gene Name: | C9orf135 |
| Gene Alias: | - |
| Gene Description: | chromosome 9 open reading frame 135 |
| Gene Type: | protein-coding |
| CpG%: | 0.015 |
| GC%: | 0.537313 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -31(CTATTTATACAC,+,0.00) |