TSS: Hg 100854.1: Difference between revisions
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.05 |distance_to_tss=565 |entrez_id=687 |gc_percent=0.572139 |gene_alias=BTEB|BTEB1 |gene_description=Kruppel like factor 9 |gene_name=KLF9 |gene_typ...") |
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{{TSSDetail | {{TSSDetail | ||
|BTEB1= | |||
|all_trans=LF345226:77 MA580803:77 LF345227:313 MA580804:313 | |||
|chr=chr9 | |||
|cpg_percent=0.05 | |cpg_percent=0.05 | ||
|distance=77 | |||
|distance_to_tss=565 | |distance_to_tss=565 | ||
|end=70414100 | |||
|end_of_center_position=70414092 | |||
|entrez_id=687 | |entrez_id=687 | ||
|gc_percent=0.572139 | |gc_percent=0.572139 | ||
|gene_alias=BTEB | |gene_alias=BTEB{{!}}BTEB1 | ||
|gene_description=Kruppel like factor 9 | |gene_description=Kruppel like factor 9 | ||
|gene_name=KLF9 | |gene_name=KLF9 | ||
Line 12: | Line 18: | ||
|nearest_refseq=NM_001206 | |nearest_refseq=NM_001206 | ||
|nearest_unigene=Hs.150557 | |nearest_unigene=Hs.150557 | ||
|tata_box= | |num_trans=4 | ||
|species=human | |||
|start=70414083 | |||
|start_of_center_position=70414091 | |||
|strand=- | |||
|tata_box=-77(CCTTTTAAATGT,+,0.00) | |||
|transcript_name=LF345226 MA580803 | |||
|tss_classification=yes | |||
|tss_id=hg_100854.1 | |tss_id=hg_100854.1 | ||
|tss_score=1 | |||
}} | }} |
Latest revision as of 17:52, 12 July 2021
Basic information about the TSS
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TSS cluster detected* |
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* The number of TSS cluster called studies (maximum 16)
Gene and protein annotation
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TATA-Box annotation
Distance to TSS: | 565 |
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Nearest PromoterID: | NM_001206 |
Entrez ID: | 687 |
Nearest Unigene: | Hs.150557 |
Nearest Refseq: | NM_001206 |
Nearest Ensembl: | ENSG00000119138 |
Gene Name: | KLF9 |
Gene Alias: | BTEB|BTEB1 |
Gene Description: | Kruppel like factor 9 |
Gene Type: | protein-coding |
CpG%: | 0.05 |
GC%: | 0.572139 |
TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -77(CCTTTTAAATGT,+,0.00) |