TSS: Hg 100874.1: Difference between revisions
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
|RDICC= | |||
|chr=chr9 | |||
|cpg_percent=0.005 | |cpg_percent=0.005 | ||
|distance=NA | |||
|distance_to_tss=16965 | |distance_to_tss=16965 | ||
|end=70793124 | |||
|end_of_center_position=70793120 | |||
|entrez_id=406987 | |entrez_id=406987 | ||
|gc_percent=0.353234 | |gc_percent=0.353234 | ||
|gene_alias=MIRN204 | |gene_alias=MIRN204{{!}}RDICC{{!}}miRNA204{{!}}mir-204 | ||
|gene_description=microRNA 204 | |gene_description=microRNA 204 | ||
|gene_name=MIR204 | |gene_name=MIR204 | ||
|gene_type=ncRNA | |gene_type=ncRNA | ||
|miRNA204= | |||
|mir-204= | |||
|nearest_ensembl=ENSG00000207935 | |nearest_ensembl=ENSG00000207935 | ||
|nearest_promoter_id=NR_029621 | |nearest_promoter_id=NR_029621 | ||
|nearest_refseq=NR_029621 | |nearest_refseq=NR_029621 | ||
|nearest_unigene= | |nearest_unigene= | ||
|tata_box= | |num_trans=0 | ||
|species=human | |||
|start=70793114 | |||
|start_of_center_position=70793119 | |||
|strand=- | |||
|tata_box=-57(AACCATAAATGG,-,0.00),-42(TTCTTTATAAGG,-,0.00),-40(CTTTATAAGGAG,+,0.00) | |||
|transcript_name= | |||
|tss_classification=no | |||
|tss_id=hg_100874.1 | |tss_id=hg_100874.1 | ||
|tss_score=1 | |||
}} | }} | ||
Latest revision as of 16:27, 15 June 2021
Basic information about the TSS
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| TSS cluster detected* |
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* The number of TSS cluster called studies (maximum 16)
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 16965 |
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| Nearest PromoterID: | NR_029621 |
| Entrez ID: | 406987 |
| Nearest Unigene: | |
| Nearest Refseq: | NR_029621 |
| Nearest Ensembl: | ENSG00000207935 |
| Gene Name: | MIR204 |
| Gene Alias: | MIRN204|RDICC|miRNA204|mir-204 |
| Gene Description: | microRNA 204 |
| Gene Type: | ncRNA |
| CpG%: | 0.005 |
| GC%: | 0.353234 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -57(AACCATAAATGG,-,0.00),-42(TTCTTTATAAGG,-,0.00),-40(CTTTATAAGGAG,+,0.00) |