TSS: Hg 189985.1: Difference between revisions
From referenceTSS
(Created page with "{{TSSDetail |all_trans=BC018937:-53 ENST00000415997.1:54 uc061zht.1:54 ENST00000491395.5:68 uc061zhu.1:68 |chr=chr21 |cpg_percent=0.03 |distance=-53 |distance_to_tss=89299 |en...") |
No edit summary |
||
| (One intermediate revision by the same user not shown) | |||
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
|all_trans= | |ABETA= | ||
|ABPP= | |||
|AD1= | |||
|APPI= | |||
|CTFgamma= | |||
|CVAP= | |||
|PN-II= | |||
|PN2= | |||
|all_trans=LF339768:14 MA575345:14 ENST00000415997.1:54 ENST00000491395.5:68 | |||
|chr=chr21 | |chr=chr21 | ||
|cpg_percent=0.03 | |cpg_percent=0.03 | ||
|distance= | |distance=14 | ||
|distance_to_tss=89299 | |distance_to_tss=89299 | ||
|end=26051096 | |end=26051096 | ||
|end_of_center_position=26051091 | |||
|entrez_id=351 | |entrez_id=351 | ||
|gc_percent=0.532338 | |gc_percent=0.532338 | ||
|gene_alias=AAA | |gene_alias=AAA{{!}}ABETA{{!}}ABPP{{!}}AD1{{!}}APPI{{!}}CTFgamma{{!}}CVAP{{!}}PN-II{{!}}PN2{{!}}preA4 | ||
|gene_description=amyloid beta precursor protein | |gene_description=amyloid beta precursor protein | ||
|gene_name=APP | |gene_name=APP | ||
| Line 16: | Line 25: | ||
|nearest_refseq=NM_000484 | |nearest_refseq=NM_000484 | ||
|nearest_unigene=Hs.434980 | |nearest_unigene=Hs.434980 | ||
|num_trans= | |num_trans=4 | ||
|species=human | |species=human | ||
|start=26051085 | |start=26051085 | ||
|start_of_center_position=26051090 | |||
|strand=- | |strand=- | ||
|transcript_name= | |transcript_name=LF339768 MA575345 | ||
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_189985.1 | |tss_id=hg_189985.1 | ||
|tss_score=1 | |tss_score=1 | ||
}} | }} | ||
Latest revision as of 02:49, 17 June 2021
Basic information about the TSS
|
| |||||||||||||
| TSS cluster detected* |
|---|
* The number of TSS cluster called studies (maximum 16)
Gene and protein annotation
|
|
TATA-Box annotation
| Distance to TSS: | 89299 |
|---|---|
| Nearest PromoterID: | NM_001136016 |
| Entrez ID: | 351 |
| Nearest Unigene: | Hs.434980 |
| Nearest Refseq: | NM_000484 |
| Nearest Ensembl: | ENSG00000142192 |
| Gene Name: | APP |
| Gene Alias: | AAA|ABETA|ABPP|AD1|APPI|CTFgamma|CVAP|PN-II|PN2|preA4 |
| Gene Description: | amyloid beta precursor protein |
| Gene Type: | protein-coding |
| CpG%: | 0.03 |
| GC%: | 0.532338 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |