TSS: Mm 112257.1: Difference between revisions

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{{TSSDetail
{{TSSDetail
|all_trans=ENSMUST00000103459.4:13 BC010327:13 BC058814:19 Z49935:66 JF330320:67 S72849:67 U88684:67 J00522:76 AB050083:89 AF089740:97 FJ233886:240 FJ233894:240 FJ233895:240 FJ233901:240 FJ233902:240 JF690393:240 JF690402:240 JF690518:240 JF690569:240 JF690394:240 EF493009:241 X83918:241 U62049:241 JX120247:241 JX120316:241 KU256748:241 KU256972:241 KU257104:241 KU257134:241 KU257451:241 KU257458:241 MF466255:241 MF466264:241 MF466268:241 MF466300:241 MF466301:241 MF466302:241 MF466313:241 MF466318:241 MF466329:241 MF466358:241 MF466368:241 MF466376:241 MF466380:241 MF466383:241 MF466387:241 MF466395:241 MF466551:241 MF466562:241 MF466564:241 MF466566:241 MF466609:241 MF466611:241 MF466620:241 MF466625:241 MF466652:241 MF466677:241 MF466694:241 AB774604:241 AB774647:241 AB774707:241 AB774715:241 AB774761:241 EU121634:241 MG675290:241 MG675325:241 MG675302:241 MG675409:241 KU256257:241 KU256355:241 KU256880:241 KU256934:241 KU256988:241 MF942179:241 MF942257:241 AB774579:241 AB774749:241 AB774752:241 AB774755:241 AY182549:241 L38854:241 Z22030:241 KU256335:241 KU256398:241 KU256496:241 KU256543:241 KU256914:241 KU256926:241 KU257296:241 KU257422:241 KU257423:241 MF466252:241 MF466272:241 MF466296:241 MF466328:241 MF466334:241 MF466348:241 MF466363:241 MF466495:241 MF466504:241 MF466615:241 MF466618:241 MF466626:241 MF466650:241 MT253344:241 AB774866:241 AB774874:241 L16982:241 Z22103:241 MG675313:241 HQ015058:241 HQ015083:241 MG675414:241 KU256255:241 KU256603:241 KU257166:241 KU257252:241 KU257286:241 KU257452:241 MF466326:241 MF466333:241 MF466382:241 MF466392:241 MF466398:241 MF466421:241 MF466449:241 MF466505:241 MF466539:241 MF466617:241 MF466619:241 MF466629:241 MF942152:241 MF942218:241 MT253110:241 MT253250:241 HQ015055:241 AB774655:241 AB774713:241 AB774690:241 AB774920:241 AY178439:241 KY199270:241 MF466466:241 HQ015081:241 AF152372:242 AB734729:242 FM179589:242 JF690484:242 JF690567:242 FM179587:242 JF690485:243 JF690568:243 EU784157:244 JF690620:244 AB774645:244 AF230099:244 S68523:244 MG675401:244 AB774630:244 AB774810:244 X06505:244 JX492473:244 MG675431:244 EF030735:244 JX492448:244 JX492450:244 X06504:244 X06509:244 KC906639:244 MG675418:244 KT596264:244 DQ241817:244 KC906641:244 HQ446551:244 KY199089:244 FJ972829:244 FJ972831:244 AB774487:246 AB774740:246 AB774808:246 AB774919:246 AB774671:246 AY539837:246 AB774543:246 EU275259:248 EF409992:251 X73009:251 JX120338:253 M64143:254 JF690659:255 JX891442:255 JX891444:255 U62632:255 JX891445:255 JF690637:255 U04352:256 JX492519:256 X86541:256 JX492371:256 JQ048936:257 HF569515:257 AJ833625:257 X94421:262 JN099720:262 JN099722:262 JN099726:262 KU615365:262 KU614064:262 KU614243:262 KU613677:262 KU615278:262 KU615310:262 KU615312:262 KJ143997:262 KU614847:262 KU615221:262 KU614796:262 KU615213:262 KU613446:262 KU613834:262 KU613868:262 KU613884:262 KU614259:262 KU615081:262 KU615085:262 KU615086:262 KU615098:262 KU615113:262 KU615119:262 KU615155:262 KU615264:262 KU614739:262 KU615102:262 KU615215:262 KU615239:262 KU615245:262 KU613498:262 AY625275:263 MF430444:264 MF430431:264 MF430447:264 MF430464:264 MF430453:264 AJ581760:264 AJ581762:264 MF430221:264 MF430236:264 MF430243:264 DQ416702:264 HF569660:264 HF569697:264 MF429959:264 MF429966:264 MF429970:264 MF429986:264 AB774842:264 EU934836:264 EU934843:264 EU934887:264 JX657384:264 JX657439:264 JX657610:264 JX657582:264 MF430028:264 EU239754:264 EU934841:264 EU934842:264 EU934884:264 EU934897:264 JX657463:264 JX657465:264 JX657480:264 JX657497:264 JX657518:264 HF569443:264 HF569427:264 MF430033:264 EU239726:264 EU239760:264 EU239770:264 EU934867:264 EU934892:264 JX657597:264 MF429976:264 JX657494:264 HF569772:264 HF569774:264 HF569775:264 HF569778:264 HF569784:264 HF569791:264 HF569805:264 JX657531:264 HF569758:264 HF569737:264 HF569783:264 FJ816332:265 FJ816333:265 FJ816334:265 FJ816335:265 FJ816336:265 FJ816337:265 FJ816338:265 FJ816339:265 FJ816340:265 FJ816341:265 FJ816342:265 FJ816343:265 FJ816344:265 HQ446550:265 HQ446705:265 HQ446707:265 MF429967:265 MG733908:265 AY172423:265 AY172479:265 AY182559:265 AY182728:265 AY603676:265 KF208026:265 KF208154:265 KF208219:265 KF208224:265 KF208282:265 X80940:265 X80944:265 X80954:265 X80970:265 X80972:265 KF208215:265 AY369940:265 AY171980:265 KU613676:265 EF680953:265 HQ446604:265 AY172910:265 AY172911:265 KF208142:265 KF208158:265 KF208168:265 KF208209:265 KF208234:265 KF208240:265 KF208279:265 KF208280:265 KF208283:265 AF546719:265 EF680984:265 AY172473:265 AY172868:265 AY182491:265 KF208184:265 KF208213:265 KF208214:265 AF547088:265 AY182407:265 AY182737:265 HQ446557:265 AY182735:265 KF208098:265 AY171923:265 AY369920:265 AY171962:265 AY174019:265 KF207965:265 AY182744:265 AY625278:266 Z22171:267 AY182511:268 AB793511:271 S69059:271 AY182529:271 KU927049:272 MN661840:272 Z22040:274 FJ440859:278 FJ478144:278 KU927152:278 HQ446706:278 MN661451:278 AY172409:278 AJ400966:278 AJ400967:278 AJ400969:278 AJ400973:278 AJ400975:278 AJ400978:278 AJ400979:278 AJ400980:278 AJ400981:278 Z75770:278 MN661405:278 MN661414:278 MN661852:278 M31959:278 AF044234:278 AF044236:278 AF044235:278 U55533:280 EU817847:281 FJ478138:283 D29667:283 AF316531:286 X73077:287 AF023212:290 EU817849:294 AY172353:295 MN661894:295 DQ355823:296 FJ478137:296 JF690396:296 JF690401:296 EU817851:296 JX657641:297 JX492408:298 AY172357:313 AF023237:313 FJ816553:316 JF690398:328 JF690400:334 JF690395:343 JF690397:350 JF690399:356 HF569717:359 X03380:370 AY878019:438 AY878038:438 AY878045:438 AY878048:438 AY877993:438 AY877994:438 AY878035:438 AY877949:438 AY877968:439 AY877967:439 AY877995:439 AY878041:439 AY877976:439 M27752:439 AY878037:446
|all_trans=MGI:2144967 MGI:4439533
|chr=chr12
|chr=chr12
|cpg_percent=0.005
|cpg_percent=0.005
Line 22: Line 22:
|nearest_refseq=NM_174885
|nearest_refseq=NM_174885
|nearest_unigene=Mm.188683
|nearest_unigene=Mm.188683
|num_trans=440
|num_trans=380794
|species=mouse
|species=mouse
|start=113859682
|start=113859682

Latest revision as of 14:58, 26 July 2021

Basic information about the TSS


TSS ID:mm_112257.1
Species:mouse
Chr:chr12
Start:113859682
End:113859700
Strand:-
TSS cluster detected*

  * The number of TSS cluster called studies (maximum 5)



Gene and protein annotation


Transcript_name:ENSMUST00000103459.4 BC010327
Distance:13
GeneID:380794
HGNC/MGI_ID:MGI:2144967 MGI:4439533
UniProt_ID:A0A075B5R1 Q91Z05
Gene_name:Immunoglobulin heavy chain (gamma polypeptide); immunoglobulin heavy variable 5-17
Gene_symbol:Ighg Ighv5-17
Gene_synonyms:Gm16609
Gene_source:MGI:2144967 MGI:4439533



TATA-Box annotation


Distance to TSS:315783
Nearest PromoterID:NM_174885
Entrez ID:238406
Nearest Unigene:Mm.188683
Nearest Refseq:NM_174885
Nearest Ensembl:ENSMUSG00000043945
Gene Name:Immunoglobulin heavy chain (gamma polypeptide); immunoglobulin heavy variable 5-17
Gene Alias:Adam6|tMDCIV
Gene Description:a disintegrin and metallopeptidase domain 6A
Gene Type:protein-coding
CpG%:0.005
GC%:0.482587
TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation):



TSS expression

Expression data not found.