TSS: Hg 10100.1: Difference between revisions
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.015 |distance_to_tss=-13646 |entrez_id=102724539 |gc_percent=0.472637 |gene_alias=- |gene_description=long intergenic non-protein coding RNA 1714 |g...") |
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{{TSSDetail | {{TSSDetail | ||
|chr=chr1 | |||
|cpg_percent=0.015 | |cpg_percent=0.015 | ||
|distance=NA | |||
|distance_to_tss=-13646 | |distance_to_tss=-13646 | ||
|end=8195029 | |||
|end_of_center_position=8195027 | |||
|entrez_id=102724539 | |entrez_id=102724539 | ||
|gc_percent=0.472637 | |gc_percent=0.472637 | ||
Line 12: | Line 16: | ||
|nearest_refseq=NR_125998 | |nearest_refseq=NR_125998 | ||
|nearest_unigene=Hs.516816 | |nearest_unigene=Hs.516816 | ||
|tata_box= | |num_trans=0 | ||
|species=human | |||
|start=8195023 | |||
|start_of_center_position=8195026 | |||
|strand=- | |||
|tata_box=-57(AGCTATTTAGGG,-,0.00),81(GGTTCTAAAAAG,-,0.00) | |||
|transcript_name= | |||
|tss_classification=no | |||
|tss_id=hg_10100.1 | |tss_id=hg_10100.1 | ||
|tss_score=1 | |||
}} | }} |
Latest revision as of 15:33, 15 June 2021
Basic information about the TSS
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TSS cluster detected* |
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* The number of TSS cluster called studies (maximum 16)
Gene and protein annotation
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TATA-Box annotation
Distance to TSS: | -13646 |
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Nearest PromoterID: | NR_125998 |
Entrez ID: | 102724539 |
Nearest Unigene: | Hs.516816 |
Nearest Refseq: | NR_125998 |
Nearest Ensembl: | ENSG00000227634 |
Gene Name: | LINC01714 |
Gene Alias: | - |
Gene Description: | long intergenic non-protein coding RNA 1714 |
Gene Type: | ncRNA |
CpG%: | 0.015 |
GC%: | 0.472637 |
TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -57(AGCTATTTAGGG,-,0.00),81(GGTTCTAAAAAG,-,0.00) |