TSS: Hg 101007.1: Difference between revisions
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
|LPC1= | |||
|chr=chr9 | |||
|cpg_percent=0 | |cpg_percent=0 | ||
|distance_to_tss= | |distance=NA | ||
|distance_to_tss=285904 | |||
|end=73437785 | |||
|end_of_center_position=73437769 | |||
|entrez_id=301 | |entrez_id=301 | ||
|gc_percent=0.303483 | |gc_percent=0.303483 | ||
|gene_alias=ANX1 | |gene_alias=ANX1{{!}}LPC1 | ||
|gene_description=annexin A1 | |gene_description=annexin A1 | ||
|gene_name=ANXA1 | |gene_name=ANXA1 | ||
| Line 12: | Line 17: | ||
|nearest_refseq=NM_000700 | |nearest_refseq=NM_000700 | ||
|nearest_unigene=Hs.494173 | |nearest_unigene=Hs.494173 | ||
|tata_box= | |num_trans=0 | ||
|species=human | |||
|start=73437752 | |||
|start_of_center_position=73437768 | |||
|strand=- | |||
|tata_box=-20(TCTTTTTAAAGG,-,0.00),-19(CTTTTTAAAGGA,+,0.00) | |||
|transcript_name= | |||
|tss_classification=no | |||
|tss_id=hg_101007.1 | |tss_id=hg_101007.1 | ||
|tss_score=1 | |||
}} | }} | ||
Latest revision as of 16:30, 15 June 2021
Basic information about the TSS
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| TSS cluster detected* |
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* The number of TSS cluster called studies (maximum 16)
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 285904 |
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| Nearest PromoterID: | NM_000700 |
| Entrez ID: | 301 |
| Nearest Unigene: | Hs.494173 |
| Nearest Refseq: | NM_000700 |
| Nearest Ensembl: | ENSG00000135046 |
| Gene Name: | ANXA1 |
| Gene Alias: | ANX1|LPC1 |
| Gene Description: | annexin A1 |
| Gene Type: | protein-coding |
| CpG%: | 0 |
| GC%: | 0.303483 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -20(TCTTTTTAAAGG,-,0.00),-19(CTTTTTAAAGGA,+,0.00) |