TSS: Hg 101023.1: Difference between revisions
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.13 |distance_to_tss=281 |entrez_id=55071 |gc_percent=0.716418 |gene_alias=- |gene_description=chromosome 9 open reading frame 40 |gene_name=C9orf40...") |
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{{TSSDetail | {{TSSDetail | ||
|all_trans=KJ894122:-3 BC039588:-211 AK225349:-241 AK000972:-277 ENST00000376854.6:-303 NM_017998:-303 | |||
|chr=chr9 | |||
|cpg_percent=0.13 | |cpg_percent=0.13 | ||
|distance_to_tss= | |distance=-3 | ||
|distance_to_tss=307 | |||
|end=74952609 | |||
|end_of_center_position=74952605 | |||
|entrez_id=55071 | |entrez_id=55071 | ||
|gc_percent=0.716418 | |gc_percent=0.716418 | ||
Line 12: | Line 17: | ||
|nearest_refseq=NM_017998 | |nearest_refseq=NM_017998 | ||
|nearest_unigene=Hs.532296 | |nearest_unigene=Hs.532296 | ||
|num_trans=6 | |||
|species=human | |||
|start=74952600 | |||
|start_of_center_position=74952604 | |||
|strand=- | |||
|transcript_name=KJ894122 | |||
|tss_classification=yes | |||
|tss_id=hg_101023.1 | |tss_id=hg_101023.1 | ||
|tss_score=1 | |||
}} | }} |
Latest revision as of 15:33, 15 June 2021
Basic information about the TSS
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TSS cluster detected* |
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* The number of TSS cluster called studies (maximum 16)
Gene and protein annotation
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TATA-Box annotation
Distance to TSS: | 307 |
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Nearest PromoterID: | NM_017998 |
Entrez ID: | 55071 |
Nearest Unigene: | Hs.532296 |
Nearest Refseq: | NM_017998 |
Nearest Ensembl: | ENSG00000135045 |
Gene Name: | C9orf40 |
Gene Alias: | - |
Gene Description: | chromosome 9 open reading frame 40 |
Gene Type: | protein-coding |
CpG%: | 0.13 |
GC%: | 0.716418 |
TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |