TSS: Hg 113006.1: Difference between revisions
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{{TSSDetail | {{TSSDetail | ||
|SWAP-70= | |||
|all_trans=KJ893325:1 AB383933:2 CU674300:3 AF210818:4 ENST00000524817.5:-36 BC000134:-36 AK304104:37 AB014540:-46 AF134894:-65 BC000616:-67 ENST00000531814.5:-69 ENST00000526358.5:-90 ENST00000447399.6:-94 ENST00000318950.11:-94 NM_015055:-94 NM_001297714:-94 AK096859:-94 | |||
|chr=chr11 | |||
|cpg_percent=0.075 | |cpg_percent=0.075 | ||
|distance=1 | |||
|distance_to_tss=96 | |distance_to_tss=96 | ||
|end=9664176 | |||
|end_of_center_position=9664174 | |||
|entrez_id=23075 | |entrez_id=23075 | ||
|gc_percent=0.706468 | |gc_percent=0.706468 | ||
|gene_alias=HSPC321 | |gene_alias=HSPC321{{!}}SWAP-70 | ||
|gene_description= | |gene_description=switching B cell complex subunit SWAP70 | ||
|gene_name=SWAP70 | |gene_name=SWAP70 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
|nearest_ensembl=ENSG00000133789 | |nearest_ensembl=ENSG00000133789 | ||
|nearest_promoter_id= | |nearest_promoter_id=NM_001297714 | ||
|nearest_refseq=NM_015055 | |nearest_refseq=NM_015055 | ||
|nearest_unigene=Hs.153026 | |nearest_unigene=Hs.153026 | ||
|num_trans=17 | |||
|species=human | |||
|start=9664170 | |||
|start_of_center_position=9664173 | |||
|strand=+ | |||
|transcript_name=KJ893325 | |||
|tss_classification=yes | |||
|tss_id=hg_113006.1 | |tss_id=hg_113006.1 | ||
|tss_score=1 | |||
}} | }} | ||
Latest revision as of 21:09, 15 June 2021
Basic information about the TSS
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| TSS cluster detected* |
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* The number of TSS cluster called studies (maximum 16)
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 96 |
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| Nearest PromoterID: | NM_001297714 |
| Entrez ID: | 23075 |
| Nearest Unigene: | Hs.153026 |
| Nearest Refseq: | NM_015055 |
| Nearest Ensembl: | ENSG00000133789 |
| Gene Name: | SWAP70 |
| Gene Alias: | HSPC321|SWAP-70 |
| Gene Description: | switching B cell complex subunit SWAP70 |
| Gene Type: | protein-coding |
| CpG%: | 0.075 |
| GC%: | 0.706468 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |